<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP06584

Description ATP-dependent DNA helicase
SequenceMAASSSTEDLLQELLNVELELQDSLLDKQEKLYEKQSELKAVLESYQGLEKPDNDGAAPQAENWSGSFEWDDEADDIRFNIFGIPGYRANQQEIINAIMSRRDVLVIMAAGGGKSLCYQLPAVIRHGIALVVSPLLSLIQDQEDEKYIYKALEKGEGDLKVLYVTPEKVSKSKRFVSKLEKCHHAGRLSLIAIDEAHCCSQWGHDFRPDYKNLGILKTQFPDVPLVALTATATKKVQLDLMAMLNIPKCIKFVSTVNRPNLFYMVREKSSVGKVVIDDIAEFIQSSYTNNESGIVYCFSRKECEQVAKELRERGVSADHYHADMDVNVREKVHMRWSSSKLQVIVGTVAFGMGINKPDVFKMVLYLILLTCMVLLYFTLFVIHHSLGKSMETYYQESGRAGRDGLPSECLLYFRPADVPRQSSMVFYENSGLQNLYDMVRYCQSKKECRRSAFFRHFAEPLQDCNGMCDNCAFSCEVKEIDASGHARAVVSLLQEIQEKDQRATMLQLVDKLKVKNKEVGFELKKDELEQLVIQLILHRVLKEEFSHTAYATNAYVTIGPLAKHVLHEKKIITLEVTSGERSSTGITKSSKRSRYSGLEVKLDNLRKELSSIHGGIFPHSILSTQQISMVCSQKPETTEQLEKIIGKLKTQKYGDRILEVIGKHEFDEEQGHQDSSSDKERQTSVNKSAKRSRNKKVVVIESSENED
Length707
PositionUnknown
OrganismCynara cardunculus var. scolymus (Globe artichoke) (Cynara scolymus)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> asterids> campanulids> Asterales> Asteraceae> Carduoideae> Cardueae> Carduinae> Cynara.
Aromaticity0.07
Grand average of hydropathy-0.366
Instability index46.78
Isoelectric point6.41
Molecular weight80102.80
Publications
PubMed=26786968

Function

Annotated function 
GO - Cellular Component
integral component of membrane	GO:0016021	IEA:UniProtKB-KW
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
3'-5' DNA helicase activity	GO:0043138	IEA:InterPro
ATP binding	GO:0005524	IEA:UniProtKB-KW
hydrolase activity	GO:0016787	IEA:UniProtKB-KW
nucleic acid binding	GO:0003676	IEA:InterPro

GO - Biological Process
DNA recombination	GO:0006310	IEA:InterPro
DNA repair	GO:0006281	IEA:InterPro
DNA replication	GO:0006260	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP06584
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     277.01|      93|     171|     260|     368|       1
---------------------------------------------------------------------------
  260-  368 (138.37/143.29)	NLFYMVR....EKSSVGKVVIDDIAEFIQSSytnneSGIV.YC.FSrkeCEqvAKELRERGvsadHYHADMDV..NVREK...VHMRWSSSKLQVIVGTVAFGMgiNKPDVFKMVLYLIL
  434-  537 (138.64/100.41)	NLYDMVRycqsKKECRRSAFFRHFAEPLQDC.....NGMCdNCaFS...CE..VKEIDASG....HARAVVSLlqEIQEKdqrATMLQLVDKLKVKNKEVGFEL..KKDELEQLVIQLIL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     142.62|      43|     466|     166|     209|       2
---------------------------------------------------------------------------
  166-  209 (75.36/48.41)	PEKVSKSKRFVSKLEKCHHAGRLsLIAIDEAHCCSQWGH.DFRPD
  635-  678 (67.27/38.89)	PETTEQLEKIIGKLKTQKYGDRI.LEVIGKHEFDEEQGHqDSSSD
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      39.38|      11|      97|     584|     594|       4
---------------------------------------------------------------------------
  584-  594 (19.92/12.58)	TGITKSSKRSR
  683-  693 (19.46/12.14)	TSVNKSAKRSR
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      95.44|      27|      34|     369|     398|       5
---------------------------------------------------------------------------
  369-  398 (44.98/40.39)	LTCMVLLYFTLFVIHHslgKSMETYYQESG
  405-  431 (50.47/36.02)	LPSECLLYFRPADVPR...QSSMVFYENSG
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP06584 with Med34 domain of Kingdom Viridiplantae
Unable to open file!