<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP06562

Description HBL053Cp
SequenceMDLDWRSTLSNQERSKYITELAQILADISQINGGTRANFDLEKLTKTAEQFETSLYASSSSKEFYLDAMRKRISAMDAAKKKTLVKQKQKAAHAVAAAQASHQQRKQVSNGSGGFASGLTNSIDPSMNSQMFLNQQAQARQQAARPMRPGALPAGIQGSGTPTNQAQMLMLKQQQQQQQQQQQQQQQQQQLQGMSSNLVAAAQAKRAQLSIQQHQLINEMKVAEIPKELLQRIPNIPQGVTTWQQITELAQQKRLTQNDLQIAKQVYQMHQQLLIKSKKQQASVNQMNIQQQSNAYQQQQQQQQQQKSMFAQQAAVVAQQQQSQQPQQPPQLSPQQQQQQQQQQPSQQQQQQQQQPQQQQQQQQQQQQQQQQKQQQQQQQQQQQQQQQRQMGPQQSQEVPNVLNKLNQVFAPAEQKALYENGKKLVQGLQLAGKLPATLNQQQQILYIKKYINQMVLKKLQQNMRLAQQMGASNPNNNQQQINNQPASRLTPGMSQMHQQQQTTAPQQQMQQRQQRPQHQQQLPIQSQIQLQMQQQAQPQPLAPQQQQQQQQQQPPQPPQPPQPPQPPQPPQPPQQSPQQQQPPQQPQQPQQQQPVQPPQQPPQPQQSQQQQAQHPLSGMAQHQYSSPSLNKATTNNVLPQQATQQSKLRQSPAQPLQVPKISLPRPTEQDMMVLKRINAEVAKSPLRLSNITNQLTIEQKQSIKNKLQSSQQLLSNVDNFIPMLYLITRNEENVRQLLQIRMLAKEIIDHASKGIFIVPPDVVDKVIFRYQKYYEFIKEQLLRRHQQMLTTRQQQQTQQQTQQQSQQQVQQQVQQQQQHIRQQQQEKHQAQHQAQHQAQQQAQQQAQHQAQQQAQHQAQQQAQHQAQQQAQQQAQQQAQQQAQQQAQQQAQQAQQQAQQQAQQQAQQQAQQQAQQQAQQEAQQQQSQAQQLHHQAHNLTHQIPVSTPSSRMPSHPNVASPHAPGSVPVNAPAKIANESKALSGMSVTPGSVHVSGLSPMNVKQSLATPVLAQLQKSSVSQSAAQSPPSENPYRQDEMKLKDLALKKSEIVSRYKHRQEVLSGSVMDLFLFTLADCLGIKEESVELVSPINPMIVDQINGTGKKKFTKAQQRIRDHDTVDCYIKDNKLIMPSKFSPGNRTYGIPLKELGYCFKNLYGPTDPREFVLNNSNAENAIETNNKKRAYDSLEISPAESDSSFLNDSKRFKVDSPDDLFVNANATMVKKNAPPIGLGLGVNMNDAGNKVWNWSYWESL
Length1253
PositionTail
OrganismEremothecium sinecaudum
KingdomFungi
LineageEukaryota> Fungi> Dikarya> Ascomycota> Saccharomycotina> Saccharomycetes> Saccharomycetales> Saccharomycetaceae> Eremothecium.
Aromaticity0.04
Grand average of hydropathy-1.118
Instability index80.21
Isoelectric point9.86
Molecular weight142466.66
Publications









Function






Annotated function


GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
transcription coregulator activity	GO:0003712	IEA:InterPro

GO - Biological Process
regulation of transcription by RNA polymerase II	GO:0006357	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP06562
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             5|     300.22|      33|      33|     861|     893|       1
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  335-  369 (64.79/ 9.55)	QQQQQQQQQQPSQQQQ...QQQQQPQQQQqqQQQQQQQ
  526-  563 (52.95/ 6.03)	QSQIQLQMQQQAQPQPlapQQQQQQQQQQppQPPQPPQ
  836-  867 (60.30/ 8.22)	QHQAQQQAQQQAQHQA...QQQAQHQ.AQ..QQAQHQA
  868-  902 (62.36/ 8.83)	QQQAQQQAQQQAQQQA...QQQAQQQAQQaqQQAQQQA
  903-  934 (59.82/ 8.07)	QQQAQQQAQQQAQQQA...QQEAQQQ.QS..QAQQLHH
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     136.95|      27|      28|     278|     304|       2
---------------------------------------------------------------------------
  165-  189 (47.06/ 8.11)	QAQMLMLKQ..QQQQQQQQQQQQQQQQ
  278-  304 (47.40/ 8.25)	KKQQASVNQMNIQQQSNAYQQQQQQQQ
  786-  809 (42.49/ 6.28)	HQQMLT...TRQQQQTQQQTQQQSQQQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             5|     612.90|     120|     225|     371|     490|       3
---------------------------------------------------------------------------
  134-  329 (88.85/13.46)	.......NQ..........................................QAQARQQAARPMRPGalpagiQGSGTPT..NqaqmlmlkqqqqqqqqqqqqqqqqqQLQGMSsnlvaaAQA....KRAQLSIQQHQLINEMKVAeipkellqriP.......NIPQGVTTWQQItelaqqkrltqndLQIAKQVYQMHQQLLikskkqqasvnqmniqqqsnayqqqqqqqqqQKSM.FAQQ.AAVVAQQ..........QQSQQPQQP....
  371-  490 (208.38/46.36)	QQKQQQQQQ..........................................QQQQQQQQQRQMGPQ......QSQEVPNVLN.........................KLNQVF......APA....EQKALYENGKKLVQGLQLA..........G.......KLPATLNQQQQI.............LYIKKYINQMVLKKL...............................QQNMRLAQQMGASNPNN..........NQQQINNQPASRL
  514-  637 (117.81/21.43)	QQRPQHQQQlpiqsqiqlqmqqqaqpqplapqqqqqqqqqqppqppqppqpPQPPQPPQPPQQSPQ......Q.QQPP...............................QQPQ......QPQ....QQQ.......P.VQPPQ....................QPPQPQQSQQQ....................QAQHPLSGM...............................AQHQY.......SSPSL..........NKATTNN......
  641-  743 (121.70/22.50)	...................................................QQATQQSKLRQ.SPA......QPLQVPKI...........................SLPR.........PT....EQDMMVL..KRI..NAEVA..................KSPLRLSNITNQ.............LTIEQ..KQSIKNKL...............................QS....SQQL.LSNVDNfipmlylitrNEENVRQLLQIRM
  953- 1031 (76.17/ 9.97)	........................................................PSHPNVASPH......APGSVP..VN.....................................APAkianESKAL........SGMSVT..........PgsvhvsgLSP......................MNVKQSLATPVLAQL...............................QKS.SVSQSAAQSPPSE..........N............
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     151.36|      48|      70|    1085|    1133|       7
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 1085- 1133 (77.13/54.43)	ELVSPINP..MIVDQINGTGKKKfTKAQQRIRDHDTVDCYIKDNKLIMPSK
 1154- 1203 (74.23/47.34)	NLYGPTDPreFVLNNSNAENAIE.TNNKKRAYDSLEISPAESDSSFLNDSK
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP06562 with Med15 domain of Kingdom Fungi
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