<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP06552

Description Mediator of RNA polymerase II transcription subunit 8 (Fragment)
SequenceDLDPLRLRLVQLIDAVSHLQSQLAAYQHHPPTQGLPPFLELVNRYNLLLTNLAAIHRLVSSEQDQQDQLEPPRRAGESADPKRDKWDSLAVVPAHRVDEAKDWIIGTLLRTKQTPEIEQAQQSAASSLPEPFLSALSSPKEPPQAPASTSFASLSQAQARLVTAAQQKIVALKQFSAGGGEEWDWKARVELDQEEEEEEEDVVMEKVPAAAGSDWTLRDLHVFMQTGKRP
Length230
PositionHead
OrganismRhodotorula sp. JG-1b
KingdomFungi
LineageEukaryota> Fungi> Dikarya> Basidiomycota> Pucciniomycotina> Microbotryomycetes> Sporidiobolales> Sporidiobolaceae> Rhodotorula> unclassified Rhodotorula.
Aromaticity0.05
Grand average of hydropathy-0.541
Instability index64.68
Isoelectric point4.95
Molecular weight25586.36
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP06552
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     239.76|      79|     112|      21|     115|       1
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   21-  115 (119.89/87.19)	SQLAAYQHHPPTQGLPPFLELVNRYNLLLTnlAAIHRLVSseqdqqdqLEPPRRAGEsadpkrDKWDSLAVVPAHRVDEAK...............DWIIGTL...LRTKQTP
  134-  230 (119.87/60.62)	SALSSPKEPPQAPASTSFASLSQAQARLVT..AAQQKIVA........LKQFSAGGG......EEWDWKARVELDQEEEEEeedvvmekvpaaagsDWTLRDLhvfMQTGKRP
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP06552 with Med8 domain of Kingdom Fungi
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