Description | Mediator of RNA polymerase II transcription subunit 17 |
Sequence | MEIRSRKKGEGEIGSNGDGRRRRRRRRREARTPFLSRDRSVVLLWKVSLVPRNTSEEMDGDLSISLDKLPVKRLEAIEENGAERFPPDLSYDDNRVNLIRRIDFAWAVEREDPNKKQKKGDNAASASKDTTSSAPWPWQSMVENLQLAHQELSVIIDLINTVEANDAVTVAGMTRPKQLPNELLSDLAVSTATKLQCFRHLGKYFKQSAKALEKQVAREARFYGALIRLQQNWKVKRHRMAASAAGNEGFYIDLFDNTLYDPASVFRPSSLSTVRVEHDSAGMLALNLPSKACHTLQFGFVSGNSDTILRGSDRTATNISNSELSGEAKREAESDDGIVKTRHSDLREVHRAVFDEQVFNLINQEAFVPSLGVNVTGIRENHLQLNIDQEASVFISLLSSTQDDHVVDDEEESDEKAAVIPMIDEEDEQEVQKKSFLPNRISSEILLKQLFHEHVFVRAKNRSASPSRSQLFGQPAKDGSNLLGHFCMSLAHRIFSYKVLMELENLASSVSYVRLISHPSWHSRTSSWTLVVDVPQSILHAGQQSLAIEKKHFRTKVVVNDDCINIEGEGAPNVVGLFKGKSENSSSVNRYECNLADLHVILLQQVASQIIRWLHEEAVIVGMKASRDFLSLWFEVEQGEVLGLVAHVDPEGGGISWWLVMGNGIGMGEEYKQEVEREDWDGERKRLLGHLSLDVLYATLLDLVTLCSNGYGGTL |
Length | 715 |
Position | Head |
Organism | Cynara cardunculus var. scolymus (Globe artichoke) (Cynara scolymus) |
Kingdom | Viridiplantae |
Lineage | Eukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> asterids> campanulids> Asterales> Asteraceae> Carduoideae> Cardueae> Carduinae> Cynara. |
Aromaticity | 0.07 |
Grand average of hydropathy | -0.410 |
Instability index | 52.85 |
Isoelectric point | 5.84 |
Molecular weight | 80261.55 |
Publications | PubMed=26786968 |
Annotated function |
Component of the Mediator complex, a coactivator involved in
the regulated transcription of nearly all RNA polymerase II-dependent
genes. Mediator functions as a bridge to convey information from gene-
specific regulatory proteins to the basal RNA polymerase II
transcription machinery. Mediator is recruited to promoters by direct
interactions with regulatory proteins and serves as a scaffold for the
assembly of a functional preinitiation complex with RNA polymerase II
and the general transcription factors.
ECO:0000256 RuleBase:RU364140 |
GO - Cellular Component | mediator complex GO:0016592 IEA:EnsemblPlants |
GO - Biological Function | transcription coregulator activity GO:0003712 IEA:InterPro |
GO - Biological Process | production of miRNAs involved in gene silencing by miRNA GO:0035196 IEA:EnsemblPlants regulation of transcription by RNA polymerase II GO:0006357 IEA:InterPro |
Binary Interactions |
Repeats | >MDP06547 --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 2| 81.50| 26| 198| 478| 508| 1 --------------------------------------------------------------------------- 478- 508 (41.18/41.68) DG..SNLLGHFCMSLAhrifsYKVLMELENLAS 681- 708 (40.31/27.25) DGerKRLLGHLSLDVL.....YATLLDLVTLCS --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 2| 51.04| 17| 237| 143| 159| 6 --------------------------------------------------------------------------- 143- 159 (30.08/22.41) EN.LQL.AHQELSVIIDLI 380- 398 (20.96/13.25) ENhLQLnIDQEASVFISLL --------------------------------------------------------------------------- |
MoRF Sequence | Start | Stop |
1) MEIRSRKKGEGEI 2) RTPFLSRDRSVVLLWK | 1 31 | 13 46 |
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