<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP06524

Description "Mediator complex, subunit Med25, von Willebrand factor type A (Fragment)"
SequenceMAEKKQLILVVEGTAALGPYWRTIISDYLEKVIRSFCDTESLKPSGSIVELALIIFNGHGSYSSCLVQRSGWTRNVDYFFEWLSAIHFTGGGFCDAAIAEGLGEALMMFPSPNGSQNQHNLGIQRHCILVAASNPYPLPTPVYRPPMQKMEPSDNSEAQSESRLSDAETVAKTFAQCSVSLSVICPKQLPKLKAVYNAVINCYLFYFISTSMLALVQSVKGWLTRLYGKRNPSAADPTIDIVKNPHYLVLISETFMEARAALNRSGITNLPSQSPIKVDTTSVPPVSGPPQTSIPAVNGSSMNRQPVPVGSIPPATVKVEPTTVSSMAPAPAPTPAFQHVPPVPRATSQGVPSLQTSSPLSVSQEMMSTNDGVQDLKPNVGGIQQPVRPAGHINILNTLSQARLTAALAGGTSMGLPSIAGNPMAMHMSNMISSGMPSTVPVAQSVISSGQSGITSIAGSGTLSGTAQVAQSTVPGSFSSATSNMAGSSSLGVSQPLGNLQGSVGMGQSVPGMSQGNLPGPQMVQSGMGMNQNMMSGVGQSGMPGAGTGSGAGTGTGSGNGTMMPTPGMSQQVQGMQSLGVNNNTAANVGLPQQTTGALQSAQSKYVKVWEGNLSGQRQGQPVFITRLEGYRSASASESLAANWPPTMQIVRLISQDHMNNKQYVGKADFLVFRAMNQHGFLGQLQEKKLCAVIQLPSQTLLLSVSDKACRLIGMLFPGVSCNYYLPKF
Length729
PositionUnknown
OrganismCynara cardunculus var. scolymus (Globe artichoke) (Cynara scolymus)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> asterids> campanulids> Asterales> Asteraceae> Carduoideae> Cardueae> Carduinae> Cynara.
Aromaticity0.06
Grand average of hydropathy-0.065
Instability index53.83
Isoelectric point9.03
Molecular weight76560.70
Publications
PubMed=26786968

Function

Annotated function 
GO - Cellular Component
integral component of membrane	GO:0016021	IEA:UniProtKB-KW
mediator complex	GO:0016592	IEA:EnsemblPlants

GO - Biological Function
DNA binding	GO:0003677	IEA:EnsemblPlants

GO - Biological Process
defense response to fungus	GO:0050832	IEA:EnsemblPlants
jasmonic acid mediated signaling pathway	GO:0009867	IEA:EnsemblPlants
positive regulation of defense response	GO:0031349	IEA:EnsemblPlants
positive regulation of flower development	GO:0009911	IEA:EnsemblPlants
positive regulation of transcription, DNA-templated	GO:0045893	IEA:EnsemblPlants
red, far-red light phototransduction	GO:0009585	IEA:EnsemblPlants
response to far red light	GO:0010218	IEA:EnsemblPlants
response to red light	GO:0010114	IEA:EnsemblPlants
trichome branching	GO:0010091	IEA:EnsemblPlants
trichome papilla formation	GO:1905499	IEA:EnsemblPlants









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP06524
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             6|     355.05|      51|      54|     492|     542|       1
---------------------------------------------------------------------------
  293-  331 (51.76/18.12)	..SIPAVN..GSSMNR..QP.VP......VGS...IP.PATVK........VEPTTVSSMAPAP
  346-  394 (66.78/25.55)	ATSQGVPSLQTSSPLS..VS.QEM...MSTND.....GVQDLKPNVG....GIQQPVRPAGHIN
  400-  453 (55.18/19.82)	SQARLTAALAGGTSMG.....LPS...IA.GNpmaMHMSNMISSGMPstvpVAQSVISS.GQSG
  458-  487 (28.77/ 6.76)	AGS...GTLSGTAQVA..QStVPGsfsSATSN...................MA..........G
  492-  542 (95.97/39.97)	GVSQPLGNLQGSVGMG..QS.VPG...MSQGN...LPGPQMVQSGMG....MNQNMMSGVGQSG
  547-  590 (56.58/20.51)	GTGSGAGTGTGS.GNGtmMP.TPG...MSQ.Q...VQG...MQS.LG....VNNNTAANVG...
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     100.36|      30|      55|      36|      69|       2
---------------------------------------------------------------------------
   36-   69 (50.16/36.51)	FCDTESLKPSGSivelALIIF...NGHGSYSSCLVQR
   93-  125 (50.20/28.24)	FCDAAIAEGLGE....ALMMFpspNGSQNQHNLGIQR
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      81.52|      27|     400|     222|     259|       4
---------------------------------------------------------------------------
  223-  256 (44.04/39.55)	LTRLYGKRNPSAAD.......PTIDIVknphylvLISETFM
  625-  659 (37.48/15.61)	ITRLEGYRSASASEslaanwpPTMQIV......rLISQDHM
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP06524 with Med25 domain of Kingdom Viridiplantae
Unable to open file!