<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP06522

Description Uncharacterized protein
SequenceMSASSGPVAYNNKDSEEELSSGGTTATVAATTSSVIEPSDGAIGVSDSGAVGGEDSDIDKGGGTPMEEDSVNPATVFCIRLKQPRSNLQYKMSVPELCRNFSAVAWCGKLNAIACASETCARIPSSNANPPFWIPIHIVIPERPTESTVFNVIADSPRDSVQFIEWSPSSCPRALLIANFHGRITIWTQPSQGSVSLVKDASCWQREHEWRQDIAVVTKWLSGVSPYRWLSSRSSSSTKSTFEEKFLSQRPQAPGEFLKRMLTKFLPHESRKLNCHGILAGWPNFLCVCSVFSSGSVQLHWSQWPSNQSGTSKWFCTSKGLLGAGPSGIMAADAIVTDSGALHVAGVPIVNPSTVVVWEVTPGPGNGFQATPKATTSNGIPPSLNPPSWDGFASLASYLFSWQEYLFLEAKQGKKQTEQDYSDMVALHCSPVSNFSAYVSPEASAQSAATTTWGSGVTAVAFDPTCGGSVIAIVIVEGQYMSPYDPDEGPSITGWRVQRWESSLEPVVLHPIFGNPTTSFGGQPPMQTVWITKVNKSIPATDYFKNNQAAATALTPEGLNTSDSDSEKAKRVVFDPFDLPSDVRTLARIVYSAHGGEVAVAFLRGGVHIFSGSSFTPVDNYQINVVSAIASPAFSSTSCCSATVWHDAVRDCTMLKIIRVLPPAVPSSQVKANSSTWERAIAERYSTELITLVAIYLDEVAYPLSTFAVVLALEVWDGLCYFDLYLLVIIVLFSNTRFWWSLMVGVDWWDAVGCTQSAAEDGIEHVLILWFLCFYSVSLNNVIAVLDADFHSLPSTQHRQQYGPGLDRIKCRLLEGTNAQEVRAMVLDMQARLLLDMLGKGIESALINPSALVGEPWQASGETLNSIDHEAMAVDPALVLNVQAYVDAVLDLASHFITRLRRYASFCRTLASHAVTAGTGGNRNMVISPTPSTGNTGATQGAQNGTASSTASTPIQAWVQGAIAKISSTSDGVSNATPNPISGPSSFMPISINTGTFPGTPAVRLIGDCHFLHRLCQLLLFCFFFRRIQLPRFIGAAQRNTDSAVHKPQPGATGKVEEISSVPTKVASSLGRSEELPISRAGQIGSGAKGPEEGPANRSRCGSGNAGQGYTFDEVKVLFLILMDLCKRTQGLAHPLPVSQVGSSNIQVRLHYIDGNYTVLPEVVEASLGPHMQNMPRPRGADAAGLLLRELELHPPAEEWHRRNTFGGPWSDPDDLGVDDSSRLSTSTDLLNFSMVESSDVHHEAQRLWPRKRRMSERDAAFGLNTSVGLGAYLGIMGSRRDVVTAVWKTGLEGVWYKLLAHKVATTHLHRVSGRPGGSAAGFMAVLCVEGHGFVLYRRLLQLHSR
Length1346
PositionTail
OrganismCynara cardunculus var. scolymus (Globe artichoke) (Cynara scolymus)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> asterids> campanulids> Asterales> Asteraceae> Carduoideae> Cardueae> Carduinae> Cynara.
Aromaticity0.08
Grand average of hydropathy-0.071
Instability index43.50
Isoelectric point6.10
Molecular weight145322.77
Publications
PubMed=26786968

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IEA:EnsemblPlants

GO - Biological Function
GO - Biological Process
circadian regulation of gene expression	GO:0032922	IEA:EnsemblPlants
positive regulation of plant-type cell wall cellulose biosynthetic process	GO:2001011	IEA:EnsemblPlants
positive regulation of systemic acquired resistance	GO:1901672	IEA:EnsemblPlants
regulation of cell wall pectin metabolic process	GO:1902066	IEA:EnsemblPlants
regulation of ethylene-activated signaling pathway	GO:0010104	IEA:EnsemblPlants
regulation of jasmonic acid mediated signaling pathway	GO:2000022	IEA:EnsemblPlants
regulation of long-day photoperiodism, flowering	GO:0048586	IEA:EnsemblPlants
regulation of transcription, DNA-templated	GO:0006355	IEA:EnsemblPlants
response to osmotic stress	GO:0006970	IEA:EnsemblPlants
root development	GO:0048364	IEA:EnsemblPlants
trichome branching	GO:0010091	IEA:EnsemblPlants
trichome papilla formation	GO:1905499	IEA:EnsemblPlants









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP06522
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     286.25|      70|     287|      32|     106|       1
---------------------------------------------------------------------------
   32-  106 (115.78/63.78)	TSSVIEPS......DGAIGVSDSGAVGGEDSDID.KGG....GTPMEEDSVNPATVFCirlkQPRSNLQYKMSvPELCRNFSA.VAW
  311-  358 (68.18/29.39)	TSKWFCTS......KGLLGAGPSGIMAADAIVTD.SGAlhvaGVPI....VNPSTV............................VVW
  376-  453 (102.29/47.24)	TSNGIPPSlnppswDGFASLASYLFSWQEYLFLEaKQG....KKQTEQDYSDMVALHC....SPVSNFSAYVS.PEASAQSAAtTTW
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     165.17|      54|     347|     767|     875|       2
---------------------------------------------------------------------------
  793-  854 (78.23/124.03)	LPSTQHRQQYGPGlDRIKC...RLLEGTNAQEVRAMVLdmqarLLLDMLGK..GIESALinPSALVG
 1084- 1142 (86.94/31.98)	IGSGAKGPEEGPA.NRSRCgsgNAGQGYTFDEVKVLFL.....ILMDLCKRtqGLAHPL..PVSQVG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     212.88|      65|     287|     695|     766|       3
---------------------------------------------------------------------------
  695-  766 (104.27/83.13)	IYLDEVAYPlSTFAVVLAlevwdGLCYFdLYLLVIIVLFS..NTRFWWSLMVGVDWWD...AVGCTQSAAEDGIEHV
  990- 1059 (108.61/66.43)	ISINTGTFP.GTPAVRLI.....GDCHF.LHRLCQLLLFCffFRRIQLPRFIGAAQRNtdsAVHKPQPGATGKVEEI
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     127.80|      38|     987|     197|     238|       8
---------------------------------------------------------------------------
  197-  238 (63.29/44.60)	LVKDASCWQREHEWRQDIAVVTKWLS....GVSPyrwlSSRSSSST
 1187- 1228 (64.50/35.23)	LLRELELHPPAEEWHRRNTFGGPWSDpddlGVDD....SSRLSTST
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     100.30|      29|     396|     510|     556|      13
---------------------------------------------------------------------------
  528-  556 (50.44/ 6.05)	TVWITKVNKSIPATDYFKNNQAAATALTP
  926-  954 (49.86/18.81)	VISPTPSTGNTGATQGAQNGTASSTASTP
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP06522 with Med16 domain of Kingdom Viridiplantae
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