<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP06521

Description Uncharacterized protein
SequenceMFRAPTASGGGGVPLTTITTQSPNPADMGDQSHHRAAAARAFQFHPARPAIIDLFNLYLGRSAREKSDDLVREPPVFLYVDVDDDINYRNKTQKRVTALNRDLPPRNEQFLVDFEQLLNQFPDREQLRTVSESVLISLVIQCSGHAPRAEFILFALRNLYNIGYIHWDTFLPSLLSSVSSAEMSVGISSTASPQPAVSSTSLSQTGMLPSSTTIPSSSNFQALSPASPLISVHGIGSPSQSANEPSSTALSPVKSSDINTGQHSAARSNTSTRDNAISSLRQLCCKIIFSALEVNLKPCTHADIFNHMMNWLVNWDQQQQWSDEVDGIKSWKRDKALFEWLHSCLDVIWLLVDDNKCRVPFYELVRSGLQFLQNISDDEALFTLILEIHRRRDMMAMHMQMLDQHIHCPTFGNQRLLSQSTTNISGEAAINMRYSPITYPSVLGEPLHGEDVALCIQRGSLDWERALRCIRHALRSTPAPDWWRRVLLVAPCNRQHPQGPTPGAVFTSDMIREANIDRIVELLRLTNSGNMVNSGKFLKNVFQALTLLLPHIDAEINCWQEWLIYSDVFFFLVKSGCIDFVDFVDKLVLRLAEDDHQILRTNHVTWLLAQIIRVELVMHALNADSRKVETTRKILSFHKEDRSSDPNNPQSILLDFISSCQNLRIWSLNSSTREYLNSEQLQKGKQIDEWWRQATKGDHMMDYMNLDDRSIGMFWVVSYTMAQPASDTVMGWLTSAGHAEVPGPNLQSNERMSMMREVHPVPISLLSGFSINLCLKLAFQMEEAMFSGEIAAHSTSFVVPFAFKCKLPPLLPEIHVNSIFFMALLTVNHLSRIETSNKNHLHQRNPSILNKPSATLLVLEILNYRLFSLYRYQGKSKTLMYDVTKILSTLKGKRGDHRVFRLAENLCMNLILSLREFFFVRKEGKGPTEFTETLNRITVVNLAIIIKTRGIADAEHLLYLQTMLEQILATSQHTWSGKTLRYFPPVLCDALIGRIDKRGLAIQAWQQAEETVIIQCTQLLTPSANPTYVMTYINTSFPQHRQYLCAGAWVLMHGHPENINSANLGRVLREFSPEEVTANIYAMVDVLLHNMQLELQHGHPLQDLILKACANLAYFIWNHELLPLDILILALIDRDDDPHALRIVVNLLERQELQQRIKFYVGNHGKPEHWLQTGIFKRIELQKALGNHLSWKERYPTFFDDIAARLLPVIPLVIYRLIENDAAEAADRVLQFYSTFLHYYPLNVTFVRDILAYFYGHLPAKLIFRILNVLDIKKMPFSESFPQHVNSSNAMCPPLEYFASLLSNLVNNVIPQCNSKVDASSNGLRTIINRNQTPGQPGSTNAFEGQKAFYQIQDPGTYTQLILETAIIEILSLPVSAAQIITALVQIIVHIQPTLAQSNHGFHGSSTSSGQGSTLPTSPSGGSTDSLGRNRQTSVLGLNSSNFVSRSGYASQQLSCLMIQACGLMLAQLPIEFHKQLYAEAARVIKESWWLTDGKRSTSELDSAVGYALLDPTWAAQDNTSTVIGNVVALLHSFFSNLPQEWLDKTHLLVNHLRPIKSVAVLRIAFRIIGPLLPRLANAHNLFTKTLELLLNMMVDVFGRNSQPSTPVEASEITDLIDFLHHIIHYEGQGGPVQPNSKARPDVLALCGRAIEDLRTDVQHLLSHLKTDANGSIYAATHPKLFQSPS
Length1686
PositionTail
OrganismCynara cardunculus var. scolymus (Globe artichoke) (Cynara scolymus)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> asterids> campanulids> Asterales> Asteraceae> Carduoideae> Cardueae> Carduinae> Cynara.
Aromaticity0.08
Grand average of hydropathy-0.109
Instability index48.72
Isoelectric point6.65
Molecular weight189829.40
Publications
PubMed=26786968

Function

Annotated function 
GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP06521
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     102.80|      33|      42|     171|     211|       1
---------------------------------------------------------------------------
  171-  203 (55.16/43.62)	LPSL..LSSVSSAEMSV...GISSTASPQPAVSSTSLS
  214-  251 (47.64/21.60)	IPSSsnFQALSPASPLIsvhGIGSPSQSANEPSSTALS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      80.37|      24|      47|    1195|    1218|       3
---------------------------------------------------------------------------
 1195- 1218 (44.24/31.83)	YP...TFFDDIAARLLPVIPL.VIYRLI
 1240- 1267 (36.13/24.45)	YPlnvTFVRDILAYFYGHLPAkLIFRIL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     138.06|      40|      47|     334|     380|       4
---------------------------------------------------------------------------
  341-  380 (70.25/57.99)	LHSCLDVIWLLVD..DNKCRVPFYELVRSGLQFLQNISDDEA
  388-  429 (67.80/39.52)	IHRRRDMMAMHMQmlDQHIHCPTFGNQRLLSQSTTNISGEAA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      93.84|      30|      44|     531|     573|       5
---------------------------------------------------------------------------
  534-  564 (50.81/53.37)	SG..KFLkNVFQALTLLLPHIDAEI..NCWQEWLI
  575-  608 (43.03/15.18)	SGciDFV.DFVDKLVLRLAEDDHQIlrTNHVTWLL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      89.41|      26|     312|    1166|    1191|       7
---------------------------------------------------------------------------
 1166- 1191 (48.59/30.31)	KPEHWLQTGIFKRIELQKALGNHL...SW
 1486- 1514 (40.82/24.29)	KESWWLTDGKRSTSELDSAVGYALldpTW
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     119.17|      38|     391|     254|     318|       9
---------------------------------------------------------------------------
  265-  308 (56.40/70.78)	AARSNTSTR.DNAISSLRQLcckiiFSALEVNLKPCTHAdIFNHM
 1515- 1553 (62.77/27.31)	AAQDNTSTViGNVVALLHSF.....FSNLPQEWLDKTHL.LVNHL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     161.10|      63|     205|     622|     688|      10
---------------------------------------------------------------------------
  622-  688 (95.78/69.45)	NADSRKVETTRkILSFHKEDRSSD.........................................................................................................................pNNPQSILLdfISSCQNLRIWSL.....NSSTREYLNSEQLQ..KGKQID
  705-  727 (21.55/ 6.12)	NLDDRSIGMFW.VVSYTMAQPASD...........................................................................................................................................................................
  850-  896 (43.77/20.80)	........................tvmgwltsaghaevpgpnlqsnermsmmrevhpvpisllsgfsinlclklafqmeeamfsgeiaahstsfvvpfafkcklppllpeihvnsiffmalltvnhlsrietsnknhlhqrnpsilNKPSATLL..VLEILNYRLFSLyryqgKSKTLMYDVTKILStlKGKRGD
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      65.43|      22|      47|    1062|    1085|      13
---------------------------------------------------------------------------
 1062- 1085 (33.35/28.27)	ANLGRVL..REFSPEEVTanIYAMVD
 1110- 1133 (32.08/20.00)	ANLAYFIwnHELLPLDIL..ILALID
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP06521 with Med23 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) GGGGVPLTTITTQSPNPADMGDQSHHRAAAA
2) HGFHGSSTSSGQGSTLPTSPSGGSTDSLGR
9
1400
39
1429










Molecular Recognition Features






MoRF SequenceStartStop




NANANA