<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP06520

Description FF domain-containing protein
SequenceMEPPAWLPKEVQTSTSQVAGSDPPVEGKSSPPSTPTVACASVAAKSTLKDGDTVSTDSMHGSDPANRANSHGYAASTPSFSYNVPQNANTTSESSRQSSSNTAMINSPGSSSFPKPSVPGVSTSSGPSFSYNIPQAEIAFSGGQSIHSGMKAIGHVAQGPNASSASSIPHSVSHHAHSTLGVTSTNSNFASPTFWMPSAPPFQMPTGVPRIPVTSGAPGRSPLSSPANTTIPSTAVASSSSSLRPGSMMPATPVQANSSAQLPIYASYASNPLMVAPPQGVWLQPAPIGGLSRPPLLPYPAFPGSFSMPAHRIPLSAVPPSDAQPPGSSIGVPGVASISSAVSDSMPLVGSGMPHELPPGTDNSKHANVVGVKEESVAIEQLDVWSAHRTETGTVYYYNAATGQSTYQKPVGFKGEPDKVYAQPTPISWEKCAGTDWSLVTTNDGKRYYYNAKTKLSSWQIPADVTELRKRQDSDVLKEQSMSVPSATTLTEKGSVPLSLSAPAINTGGRDAISAGASGVPVSSSALDLIKKKLQDSTAPATSLPHQTSAGAMSSELNGSTPVDVVGKGSHSENGKDKVKDDNADGNLSNSSSDSEDVDSGPTKEERAIQFKEMLKDRGVAPFSKWEKELPKFVFDPRFKAIPSYSARRALFDHFVRTRAEEERKEKRAAQKAAIEGYKQLLDEAKEDIDHNTDYQTFKRKWGHDPRFEVKDNLRSDPRYKSVKHEDREALFNEYISELKVSEEEAERAEKLKERERALRKRKEREEQEVERVRSKARRKEAIESYQALLVETIKDPQVSWTDAKPKLEKDPQGRAGNPYLDQSDLEKLFREHVKLLHDRCAHEFKALLADVITTDAGAKEYEDGKTVLSSWSTAKRLLKDDTRYNKMPRKDRESLWRRHVEELQRRRKSAMDKELSEKHGDVRTVDSRKHLSGSRRTHDRR
Length942
PositionUnknown
OrganismCynara cardunculus var. scolymus (Globe artichoke) (Cynara scolymus)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> asterids> campanulids> Asterales> Asteraceae> Carduoideae> Cardueae> Carduinae> Cynara.
Aromaticity0.06
Grand average of hydropathy-0.734
Instability index54.99
Isoelectric point8.68
Molecular weight102330.64
Publications
PubMed=26786968

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP06520
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             6|     590.60|      97|      97|     109|     205|       1
---------------------------------------------------------------------------
   21-   91 (71.32/25.15)	...................SD.......PPVE.......GKSS..P.PS.TP.....................TVACASVA........AKSTL....KDGdtvstDSMHGSdpaNR.ANSH...G.......YAASTPSFSYNVPQNANTT
   92-  179 (138.51/55.22)	....SESSRQSSS.NTAMINS.......P..........GSSSF.PKPS.VP.....................GVSTSSGPSFSYNIPQAEIAF....SGG.....QSIHSG...MK.AIGHVAQG.....P.NASSASSIPHSVSHHAHST
  180-  272 (119.44/46.68)	LGVTSTNSNFASP.TFWMPSA.......PPFQMP....tGVPRI.PVTSgAP.....................GRSPLSSPA.NTTIPSTAVA.....SSS.....SSLRPG.smMP.A......T.....PvQANSSAQLPIYAS.YASNP
  273-  377 (96.05/36.21)	LMV.......APPqGVWLQPApigglsrPPL.LPypafpGSFSM.PAHR.IP........................LSAVPPSDAQPPGSSIGV....PGV.....ASISSA...VSdSMPLVGSGmphelP.PGTDNSKHANVVGVKEESV
  382-  467 (99.71/37.86)	LDVWSAHRTETGT.VYYYNAA.................tGQSTY.QKP..........................VGFKGEPDKVYAQP.TPISWekcaGTD.....WSLVTT...ND.GKRYYYNA.....K.TKLSSWQIPADVTE.....
  468-  554 (65.56/22.57)	LRKRQDSDVLKEQ.SMSVPSA.......TTL.............tEKGS.VPlslsapaintggrdaisagasGVPVSS...............................SA...LD.LIKKKLQD.....S.TA.PATSLPHQTSAGAMS.
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             6|     351.86|      58|      58|     700|     757|       2
---------------------------------------------------------------------------
  559-  618 (51.25/24.82)	...GST.PVDVVGKGSHSENGKDKV.KDDNADGNLSNSSSdseDVD...SGPTKE...ERAIQFKEmlKDR
  624-  673 (58.95/29.60)	SKWEKElPKFVF......DPRFKAIpSYSARRALFDHFVR...T.R...AEE......ERKEKRAA..QKA
  700-  757 (94.80/51.85)	RKWGHD.PRFEVKDNLRSDPRYKSV.KHEDREALFNEYIS...ELK...VSEEEA...ERAEKLKE..RER
  760-  805 (49.29/23.60)	RKRKER.EEQEV.ERVRSKARRKEA.I.ESYQALLVETIK...DPQ...VSWTDA...K............
  807-  857 (49.99/24.04)	.KLEKD.PQGRA.....GNP.Y..L.DQSDLEKLFREHVK...LLHdrcAHEFKA...LLADVITT..DA.
  871-  919 (47.57/22.54)	.SWSTA.KRL.....LKDDTRYNKM.PRKDRESLWRRHVE...ELQ...RRRKSAmdkELSEK........
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP06520 with Med35 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) HSGMKAIGHVAQGPNASSASSIPHSVSHHAHSTLGVT
2) LIKKKLQDSTAPATSLPHQTSAGAMSSELNGSTPVDVVGKGSHSENGKDKVKDDNADGNLSNSSSDSEDVDSGPTKEERAIQFK
3) LRKRQDSDVLKEQSMSVPSATTLTEKGSVPLSLSAPAINTGGRDAISAGAS
4) MEPPAWLPKEVQTSTSQVAGSDPPVEGKSSPPSTPTVACASVAAKSTLKDGDTVSTDSMHGSDPANRANSHGYAASTPSFSYNVPQNANTTSESSRQSSSNTAMINSPGSSSFPKPSVPGVSTSSGPS
5) PTGVPRIPVTSGAPGRSPLSSPANTTIPSTAVASSSSSLRPGSMMPATPVQA
6) RRKSAMDKELSEKHGDVRTVDSRKHLSGSRRTHDRR
147
529
468
1
205
907
183
612
518
128
256
942










Molecular Recognition Features






MoRF SequenceStartStop




1) LIKKKL
2) PAWLPKEV
529
4
534
11