<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP06518

Description Uncharacterized protein
SequenceMAVTMAVTIPVSTNMWDGVMEMIKSAQNKGVDPLMWAVELSSTLLSAGVSMPSTEVAELLVSHICWSNNVPIAWKFLEKALSIRIVPPMLVLALLSNRVIPSRRSYPAAYRLYLELLKRHIFPLASEVNGSNYHKIMESIDQALNLHQIFGFQSSEPGILLVEFIFSVVWELLDASLDDENLLELVPEKKSIWPIKSQDMEINDHNNFGEQKIDFHQGLYKSNTTMSIEIIGELFRNKVTSRILHLARRNMPVHWGSFIQHLRLLVANSTALRNSKDITPEALLQLTSDSRVLLSRECKTISLQQFHAVMACGSLISSAGQSHGASRSATWLPIDLFLEDTMDGYVVATTSAAETLTETSFVMLSINTCTCVLGLLKAHQAITQASWQDALLGLWIAALRLVQREDEAVEGPVPRLDTCLCLLLCTTTLAVANIIEEEENALLEEDDHKRVHQGSEAQVLGNCRKSLVSSLQQLGDYEGLLTPPLSVTSIANQAAAKAIMFFSGISVGSGYLDGVSLNDMPVTCGVFSNLHMIYLNRTFSAYVIFLVAGFMVKSDTFLYAAGNMRHLIVEACIARNLLDTSAYLWPGYVKGHSNQIPRTISGQMPGWSSLMKGSSLTPSMMHTLVSTPASSLAEIEKIYGIATTGSDEEKISAATVLCGASLTRGWNIQEHTGYFIIKLLAPPVPVDYSGSESHLIVYAPLLNVLLVGISSIDCVQIFSLHGLAPHLAGVLMPICEVFGSCSPTVSCTLSTGERLCPLAVFSNAFTLLLKLWRFHQPALEHVLGDVTPVGSQLTPEFLLLARNSQLASRGNSLDQKTRRGHFRRCNLSSSEPIFLDSFPKLTFWYRQHQACIASTLSDLKPGTSVYQIFDALLNMMFRKMNRGGQSLTPTTSGSSSSSGPIPEDCTLRLKLPAWDILEAVPFVLDAALTACAHGRLSPRELTTVVIIPLSIFMAGLKDLADFLPASMATIVSYLSAETTRGLWKPASMNGTDWPSPATSLAMVEKNMNKILSATGVDVPSLSAGGTTQATLPLPLAALVSLTITYKVDRDSESVLNLAAPALNALGAGCPWPCMAIISALWVQKAKRWTDYLVFSASRTVFHHNSDAVVQLLRVCFQSTVGLASPFAVATGGGVGSLLGHGFGSHCSGGIAPVAPGILYLRVHRSVRDVMFMTEEIVTVLMHTVREIVSTHLPMEKMRRAKNGMALRYGEVSLSAAMTRIKLAASLGASIVWITGRLNLIQSLIKETLPSWFISGHKSDLSKGETGGMVGMLMGYALAYFAVLSGAFAWGVDAASSASKKRPFILGAHLEFMARALDGKISLGCNKATWRAYVSGFVSLMVSCAPKWASEVDVEVLKSLSKGLRKWDEEELALALLGISGHGESPMTV
Length1388
PositionTail
OrganismCynara cardunculus var. scolymus (Globe artichoke) (Cynara scolymus)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> asterids> campanulids> Asterales> Asteraceae> Carduoideae> Cardueae> Carduinae> Cynara.
Aromaticity0.07
Grand average of hydropathy0.241
Instability index42.38
Isoelectric point6.62
Molecular weight150789.26
Publications
PubMed=26786968

Function

Annotated function 
GO - Cellular Component
integral component of membrane	GO:0016021	IEA:UniProtKB-KW
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process
regulation of phenylpropanoid metabolic process	GO:2000762	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP06518
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     661.13|     221|     480|     245|     490|       1
---------------------------------------------------------------------------
  245-  490 (326.13/241.50)	HLARRNMPVH..WGSFIQHLrllvanSTALRNSKDITPEALLqltSDSRVLLSR..ECKTISLQQ.FHAVMACGSLISS.....AGQSHGASRSATwlpIDlflEDTMDG.YVVATTSAAETLTETSFVMLSI.....NTC.TCVLGLLKAHQAITQASwqDALLGLWI.......AALRLVQREDEAVEGPVPrlDTClCLLLCTTTLAVANIIEEEENALLEEDDHKRVHQGSEAQVLGNCRKSLVSSLQQLGDYeglLtpPLSVTSI
  726-  970 (335.00/191.03)	HLAGVLMPICevFGSCSPTV......SCTLSTGERLCPLAVF...SNAFTLLLKlwRFHQPALEHvLGDVTPVGSQLTPeflllARNSQLASRGNS...LD...QKTRRGhFRRCNLSSSEPIFLDSFPKLTFwyrqhQACiASTLSDLKPGTSVYQIF..DALLNMMFrkmnrggQSLTPTTSGSSSSSGPIP..EDC.TLRLKLPAWDILEAVPFVLDAALTACAHGRLSPRELTTVVIIPLSIFMAGLKDLADF...L..PASMATI
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     298.85|      90|     358|     619|     719|       2
---------------------------------------------------------------------------
  619-  719 (142.46/97.28)	SMMHTLVSTPASSLAEIEKiygiattgsDEEKISAATVLCGASLTRGWNIQEHTGYFIIKL..LAPPVPVDySGSESHLIVYAPLLNVLLVGIsSIDCVQIFS
  987- 1078 (156.39/83.63)	SMNGTDWPSPATSLAMVEK.........NMNKILSATGVDVPSLSAGGTTQATLPLPLAALvsLTITYKVD.RDSESVLNLAAPALNALGAGC.PWPCMAIIS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     109.84|      34|      54|      31|      64|       4
---------------------------------------------------------------------------
   31-   64 (56.87/35.53)	VDPLMWAVELSSTLLSAGVSMPST..EVAELLVSHI
   86-  121 (52.97/32.55)	VPPMLVLALLSNRVIPSRRSYPAAyrLYLELLKRHI
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     101.93|      34|      98|    1225|    1263|       5
---------------------------------------------------------------------------
 1225- 1263 (53.00/42.34)	SLGAS.IVW...ITGRLNLIQSlikeTLPSWF....ISGHKSdLSKG
 1321- 1362 (48.93/26.73)	SLGCNkATWrayVSGFVSLMVS....CAPKWAsevdVEVLKS.LSKG
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP06518 with Med33 domain of Kingdom Viridiplantae
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