<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP06516

Description Uncharacterized protein
SequenceMDGPLGVGQSQPQQQQQPEQPPPAKVVERLNPAVQQQLNLESVKTRAISLFKAISRILEDFDLIARTNSVPKWQDVLGQFSMVNLELYNIVEDIKKVSKAFVVHPKNVNAENAAILPVMISSKLLPEIEADDNSKREQIDMIGAACESAEKVIADTRKTYFGTRQGPTNILTLDKAQAAKIQEQENLLRHAVNHGQGLRIPMDQRQITSALPAHLVDVLPVGDSVQTISESSGMYLKNTPPMSSNAVNNQGTLLQNQLSQLHDLQGQAQQKYQLHGQNQMQFSQSLGAQQFQGRQLPSGAIQHGIAQSQLNQGNQLTRHLNQMSSTANSALFNAAQATPNNQMFGLSGANRTLGSQNLNDQVFNMGAANPTTMLPIQQQQQQQQQQGGFGNMQQNTQNLQPGMVPMQQNPQQNHNNFQQHRQNQQ
Length425
PositionHead
OrganismCynara cardunculus var. scolymus (Globe artichoke) (Cynara scolymus)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> asterids> campanulids> Asterales> Asteraceae> Carduoideae> Cardueae> Carduinae> Cynara.
Aromaticity0.04
Grand average of hydropathy-0.656
Instability index49.11
Isoelectric point7.17
Molecular weight46958.12
Publications
PubMed=26786968

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IEA:EnsemblPlants

GO - Biological Function
GO - Biological Process
defense response to fungus	GO:0050832	IEA:EnsemblPlants
regulation of flower development	GO:0009909	IEA:EnsemblPlants









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP06516
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     114.84|      33|     366|       5|      39|       1
---------------------------------------------------------------------------
    5-   39 (57.43/25.06)	LGVGQSQPQQQQQP.........EQPPPAKVVERLNPavQQQLN
  374-  415 (57.41/21.20)	LPIQQQQQQQQQQGgfgnmqqntQNLQPGMVPMQQNP..QQNHN
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      89.58|      18|      18|     306|     323|       2
---------------------------------------------------------------------------
  264-  280 (29.56/12.54)	LQGQAQQKYQL.HGQNQM
  306-  323 (33.92/15.58)	AQSQLNQGNQLTRHLNQM
  327-  343 (26.10/10.13)	ANSALFNAAQATPN.NQM
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP06516 with Med8 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) FQGRQLPSGAIQHGIAQSQLNQGNQLTRHLNQMSSTANSALFNAAQATPNNQMFGLSGANRTLGSQNLNDQVFNMGAANPTTMLPIQQQQQQQQQQGGFGNMQQNTQNLQPGMVPMQQNPQQNHNNFQQHRQNQQ
2) MDGPLGVGQSQPQQQQQPEQPPPAKVVERLN
3) SESSGMYLKNTPPMSSNAVNNQGTLLQNQLSQ
291
1
229
425
31
260










Molecular Recognition Features






MoRF SequenceStartStop




NANANA