<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP06515

Description "Transcription elongation factor, TFIIS/CRSP70, N-terminal, sub-type"
SequenceMDLEEFRAILSNSGVDVWEIMDAAISVASTDYARELKHRRDGIVERLYTQQCSNCDLNLNEEQPNGVVQTITKEVDDDCIGGGDSPLTPQSVPQDDEDEDHDPYGGLFDDEQTKILRIKEQLEDRHQTEDAVIELLQTLADMDLTFTGLKETDIGRHVNRLRKHPSNEVKRLVKHLVSKWKDLVDEWVGSKSSHGDLAPATLTDGDSPVVHNVPRSGQSGNHQGPDFGYSPNPHNGSSGSERKNSEPEQRPKAVVPKKAATSSRPAPQSQSRPAMVASASAPPPNEFPFRVVDSEEDILKPLRHELIQIAAHPLVTVQHLVSDMATAGVPLSHLFLFTQNPSSPDSLCHPRPTKLVAARPLVVVQHLESDMATDGADVPLIHVVK
Length385
PositionUnknown
OrganismCynara cardunculus var. scolymus (Globe artichoke) (Cynara scolymus)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> asterids> campanulids> Asterales> Asteraceae> Carduoideae> Cardueae> Carduinae> Cynara.
Aromaticity0.04
Grand average of hydropathy-0.585
Instability index55.79
Isoelectric point5.08
Molecular weight42367.71
Publications
PubMed=26786968

Function

Annotated function 
GO - Cellular Component
cytosol	GO:0005829	IEA:EnsemblPlants
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
translation elongation factor activity	GO:0003746	IEA:UniProtKB-KW

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP06515
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     145.18|      43|      46|     289|     333|       1
---------------------------------------------------------------------------
  289-  333 (71.47/44.51)	FRVVDSEEDIL.KPlRHELIqIAAHPLVTVQHLVSDMATAG..VPLSH
  337-  382 (73.71/38.55)	FTQNPSSPDSLcHP.RPTKL.VAARPLVVVQHLESDMATDGadVPLIH
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     111.88|      21|      21|     205|     225|       2
---------------------------------------------------------------------------
   83-  103 (33.52/16.45)	GDSPlTPQSVPQDDEDEDH.DP
  205-  225 (41.07/21.74)	GDSP.VVHNVPRSGQSGNHQGP
  228-  247 (37.29/19.09)	GYSP.NPHN.GSSGSERKNSEP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      41.46|      13|      19|     250|     267|       5
---------------------------------------------------------------------------
  250-  267 (15.12/17.30)	RPkAVVpkkaATSSRPAP
  272-  284 (26.34/12.16)	RP.AMV....ASASAPPP
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP06515 with Med26 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) DCIGGGDSPLTPQSVPQDDEDEDHDPYGGL
2) VGSKSSHGDLAPATLTDGDSPVVHNVPRSGQSGNHQGPDFGYSPNPHNGSSGSERKNSEPEQRPKAVVPKKAATSSRPAPQSQSRPAMVASASAPPPNEFPFRVVDS
78
188
107
294










Molecular Recognition Features






MoRF SequenceStartStop




NANANA