<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP06500

Description Mediator of RNA polymerase II transcription subunit 20
SequenceMPITGVYFIPSNPNASTALQIITERLRAAFPNEELTPIGRWGLEQKLLRDTPGLLPSSNSNKKPPNPRYMQFLSLTHYPTHGFIYTSEPEKPAPEPNQGAPGPVNSIAPNHSPSPPMVMTTIPPSSYGTLFQHFNYACQPIWSHRLTLAVPNGIVYEVGDFRVRLGDVRQTFPTARVRGTVVEIEWRGPSVVEAIPVDREDGSFSAGVGTGQDGDVDVETTGIDLASSAIEESDIDAEYAATASLIREFWGRLGVEAREAILVPNVGMEVKDRLRRWKKAGSGVDARVDTSVDGAGSVVGERADEDPDPWSGADVARQFMEVLRFNR
Length327
PositionHead
OrganismPenicillium freii
KingdomFungi
LineageEukaryota> Fungi> Dikarya> Ascomycota> Pezizomycotina> Eurotiomycetes> Eurotiomycetidae> Eurotiales> Aspergillaceae> Penicillium.
Aromaticity0.08
Grand average of hydropathy-0.369
Instability index40.28
Isoelectric point5.04
Molecular weight35751.67
Publications









Function






Annotated function

Component of the Mediator complex, a coactivator involved in
the regulated transcription of nearly all RNA polymerase II-dependent
genes. Mediator functions as a bridge to convey information from gene-
specific regulatory proteins to the basal RNA polymerase II
transcription machinery. Mediator is recruited to promoters by direct
interactions with regulatory proteins and serves as a scaffold for the
assembly of a functional preinitiation complex with RNA polymerase II
and the general transcription factors. 


GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
transcription coregulator activity	GO:0003712	IEA:InterPro

GO - Biological Process
regulation of transcription by RNA polymerase II	GO:0006357	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP06500
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      99.90|      28|      33|      61|      92|       1
---------------------------------------------------------------------------
   61-   92 (45.55/32.14)	NKKPPNPryMQFLSLTHYPTHGFIYTSEPekP
   97-  124 (54.34/27.00)	NQGAPGP..VNSIAPNHSPSPPMVMTTIP..P
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      79.65|      24|      28|     250|     273|       2
---------------------------------------------------------------------------
  250-  273 (42.72/30.22)	WGRL..GVEAREAILVPNVGMEVKDR
  277-  302 (36.93/25.13)	WKKAgsGVDARVDTSVDGAGSVVGER
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      74.45|      25|      33|     182|     206|       3
---------------------------------------------------------------------------
  182-  206 (42.64/27.31)	VEIEWRGPSVV.EAIPVDREDGSFSA
  216-  241 (31.81/18.58)	VDVETTGIDLAsSAIEESDIDAEYAA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     107.72|      31|     118|      21|      51|       4
---------------------------------------------------------------------------
   21-   51 (53.38/35.91)	IITERLRAAFPNEELTPIGRWGLEQKLLRDT
  141-  171 (54.34/36.68)	IWSHRLTLAVPNGIVYEVGDFRVRLGDVRQT
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP06500 with Med20 domain of Kingdom Fungi
Unable to open file!