<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP06477

Description HER211Cp
SequenceMRQSDELLSPSLTLQELQHALTHDSGTRAELEARISNVRDSVLPVRLLFNDFLRTLAQIDQLGDRSPQEKFALVRTKLLELHSRVRSLVGDFQALKPLLNTMSTYSETRDQKFSPLETLSLSSETVKPLGTSPAYRKPAVTPGSNAPTPAAAAALAAGVASSGGSSSTAAVGGITQFPGTIPHINPGVSPLTMLASPLAGISPGRKVSVAQQSQQKQPAVPHKAPPNKTPVINSTNLSPQSILNMSAAESVGANTIGMAGHMGTAVAGPVGTGIPDLDALDLNSVELGSLNLDLLG
Length296
PositionTail
OrganismEremothecium sinecaudum
KingdomFungi
LineageEukaryota> Fungi> Dikarya> Ascomycota> Saccharomycotina> Saccharomycetes> Saccharomycetales> Saccharomycetaceae> Eremothecium.
Aromaticity0.03
Grand average of hydropathy-0.098
Instability index52.59
Isoelectric point7.03
Molecular weight30798.63
Publications









Function






Annotated function


GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
transcription coregulator activity	GO:0003712	IEA:InterPro

GO - Biological Process
regulation of transcription by RNA polymerase II	GO:0006357	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP06477
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     107.20|      35|      39|      38|      76|       1
---------------------------------------------------------------------------
   42-   76 (58.67/44.53)	VLP....VRLLFNDF..LRTLAQIDQLGDRSPQEKFALVRT
   78-  118 (48.52/26.76)	LLElhsrVRSLVGDFqaLKPLLNTMSTYSETRDQKFSPLET
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     138.88|      36|      39|     155|     190|       2
---------------------------------------------------------------------------
  138-  181 (50.39/24.35)	PA.VTPGSnAP.....tpaaaaaLA...AGVASSGGSSSTAAVGGI.TQFPGTI
  182-  220 (45.81/21.54)	PH.INPGV.SP.........ltmLAsplAGI.SPGRKVSVAQQSQQ.KQ.P.AV
  221-  270 (42.69/19.63)	PHkAPPNK.TPvinstnlspqsiLN...MSAAESVGANTIGMAGHMgTAVAGPV
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP06477 with Med3 domain of Kingdom Fungi
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