<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP06443

Description Uncharacterized protein
SequenceMFSQFRHAVENFTPQPRKSVDEDPASGEDRSTSPGQLAENAFINLRKSFASQRSASPTPKASTRPQKSTLEERLRAVAFTIGDASNGTTPDPSARASPAPSRTEVRDHPLSPTSTPLPESRPTSPPVEINVSGILSVDSFATVGQKETAPLPTLLVEHDSNAGITGGTSAASPDPLAVASIDHSPTDGKSATVEPTSTTAESESQSITEADVAPEVNTPPFADITPPSVLTRLDAALDSAVEGPITANSESPPEKILSPQGDSPTVEELQERLQLVERRFAGIDIQDVSTSFKRLQAEKLVADAIFRELTPLETTKDSDALRDYLQNMKLKIEISQEEVNCLNGKLTSQEDRIEELRDTHRLESRSQSEQIESLRKQLAETESLLKASQGTLSQGEDRAATQKAEIDRLQKEVDKAKDMAKEEEEKRVKAISLLKTVRQKLVKAEKDKEDVVKELTGLREQEMAVRSKEEAEKVKLQSDIESAVADKEKTVNTLKAQYEKEHSLAKERHERGISALRSQFELETVTIKSTHGKELSQKDLQITDLQSKLQALSHDKSTLFDQLQQRQAEMEGLQTEVVSLKNESVELLHQLRASEDQVALLREELVESRREQDRHSREGLGNSEEAARILSALEVKHEAKVSGLERVISNLEKERTESESEWSRKVREKNNEVENLKAQLGSATRLKQQDDGVVDNLKAEIERLEQVILSKESLHTQNSALTEKLREMENFSNARAAELDAKVRLLEAQIDEGKTRETQLRSSNKTLREELRKVQSSVALLDRQRNPGVGYWTSKDSSAMDSRVSISSASSDGPSQDVRSPRAENSAPVNNDEEVNLEYIRNVILQFLEHKDMRSGVSASSWVGLCKLFLEEDVTVQSQETIESEISNSVLLLFRSYPGDPDLHGYLKYAVQNKMVSLAVFVATLLQAARSSKLHNAATLDMLCRIALDAHYASGLPAIGSLVAAEDSLMDILSIVQDALALLRTAHSVRMTHFHQLTTSASELVVALLTCIPDLSQLPTGQAMVHFADVNDLLQNFRLTPELRQLLETFFFSLSLVIGDEAKSTREAQMIQTVPMVRGKGELVGMGSNTDIVTLSLILNHIVTFRGCESGAGDGDYPVALILGTFRWTSWTPVVFYTQLVLRLIWKAFMVGRLPRLLVSFQKHVNTESNADTDWKIALQGALSNLLRRNDLLTSCHKVLSEMEGTEGQRPLTCSFIHQLLSYGLVDQRIAVGLDSGISNYSVPSLQSEAEDSGQTPESFIEWKINRDTEETEQWLEKLWRNPGSHALFTELLLKKLSTCISQLDLESLSQCCKVLHLSNHAVDILALHTNIANLVSQLLGFLEEYNCETVGDPQSAISLLGMIVLFLQSNVTRFNLQQSTFIVKNRTLSCEYLLPNLSQAVAYDKVSPEDATAFNAWFKTLFDNSSEGIDDTILRCTNPKTLLRISPALLLHAIKMTSEGKIESDILNNGVMYFIDPVLNWTLVNAIKYLTLEIQQRVLNAPMHLEVLQTIVTSASCPRPVLLLCGPYVLSLVAQRKKENLLSATFDNEEVQQVIGEILGPKQAGHINALLQTSRSWQDQPRQAIQDALTLARTGKGPFIDIEHCLKVASPSRFLQLLWSQLVISAGLGGPIEGIKRLAIHVLTMPQPGPPLLPIFINTVLPSLITFIDGQQSSEQTTQADLLYSIVSSLFTAAVSMEVAMRTVMGHQAPALGQHSSVLARRLVTDLCSRKFSYTSTILSQRLSASPPCVANFPIFMELSV
Length1762
PositionTail
OrganismMoniliophthora roreri
KingdomFungi
LineageEukaryota> Fungi> Dikarya> Basidiomycota> Agaricomycotina> Agaricomycetes> Agaricomycetidae> Agaricales> Marasmiaceae> Moniliophthora.
Aromaticity0.05
Grand average of hydropathy-0.299
Instability index52.92
Isoelectric point5.30
Molecular weight194920.51
Publications









Function






Annotated function


GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
transcription coregulator activity	GO:0003712	IEA:InterPro

GO - Biological Process
regulation of transcription by RNA polymerase II	GO:0006357	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP06443
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             5|     242.32|      44|      46|     164|     207|       2
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   14-   45 (40.59/18.69)	.........PQP..RKSVDEDPASGEDRSTS.P.GQ.LAENAFIN.L
   81-  126 (59.60/31.15)	IGDASNGTTPDPSARASPAPSRTEVRDHPLS.PTSTpLPESRPTSpP
  127-  164 (44.34/21.15)	VEINVS.......GILSVDSFATVGQKETAPlPTLL.VEHDSNAG.I
  165-  207 (65.57/35.06)	.TGGTSAASPDPLAVASIDHSPTDGKSATVE.PTST.TAESESQS.I
  241-  267 (32.23/13.21)	VEGPITANSESP..PEKI.LSP.QGDSPTVE................
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             5|     217.62|      39|      46|     691|     729|       3
---------------------------------------------------------------------------
  567-  595 (31.89/16.45)	.......QAE.ME.GLQTEV..V...SLKNESVELLHQLRASE
  596-  634 (41.07/23.62)	DQVA.LLREElVEsRREQDR..HSREGLGNSEEA.ARILSALE
  638-  670 (36.72/20.22)	E.......AK.VS.GLERVIsnLEKERTESE.SEWSRKVREKN
  691-  729 (61.80/39.81)	DGVVDNLKAE.IE.RLEQVI..LSKESLHTQNSALTEKLREME
  740-  775 (46.14/27.57)	DAKVRLLEAQ.ID.EGK.....TRETQLRSSNKTLREELRKVQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      81.57|      27|      30|    1427|    1456|       5
---------------------------------------------------------------------------
 1427- 1456 (42.46/38.53)	SEG.IDDTILrctNPKTLLRISPAL...LLHAIK
 1459- 1489 (39.11/25.48)	SEGkIESDIL...NNGVMYFIDPVLnwtLVNAIK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     105.72|      32|     495|     844|     875|       6
---------------------------------------------------------------------------
  844-  875 (58.33/43.44)	ILQFLEHKDMRS.G..VSASSWVGLCKLFLEEDVT
 1339- 1373 (47.39/33.71)	LLGFLEEYNCETvGdpQSAISLLGMIVLFLQSNVT
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     197.83|      66|      83|     396|     461|       7
---------------------------------------------------------------------------
  396-  461 (99.78/70.23)	EDRAATQKAEIDRLQKEVDKAKDMAKEEEEKRVKAISLLKTVRQKLVKAEKDKEDVVKEL..TGLREQ
  481-  548 (98.06/68.88)	ESAVADKEKTVNTLKAQYEKEHSLAKERHERGISALRSQFELETVTIKSTHGKELSQKDLqiTDLQSK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      77.51|      24|     948|     275|     298|       8
---------------------------------------------------------------------------
  275-  298 (40.66/23.95)	LVERRFA.GIDIQDVSTSFKRLQAE
 1225- 1249 (36.86/21.05)	LVDQRIAvGLDSGISNYSVPSLQSE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     225.74|      73|     755|     898|     974|      10
---------------------------------------------------------------------------
  898-  974 (113.30/85.51)	PGDPDLHGYLKYA.......VQNKMVSLAVFVATLLQAARSSKLHNAATLDMLCRIALdAHYAsglPAIG..SLVAAEDSLMDILS
 1649- 1730 (112.44/72.72)	PGPPLLPIFINTVlpslitfIDGQQSSEQTTQADLLYSIVSSLFTAAVSMEVAMRTVM.GHQA...PALGqhSSVLARRLVTDLCS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      60.93|      18|      32|    1146|    1163|      11
---------------------------------------------------------------------------
 1146- 1163 (33.96/21.70)	WKAFMVGRLPR......LLVSFQK
 1175- 1198 (26.97/15.67)	WKIALQGALSNllrrndLLTSCHK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     132.52|      34|     607|     976|    1018|      13
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  976- 1009 (53.21/27.73)	VQDALALLRTAHSVRMTHFHQLTTSASELVVALL
 1586- 1619 (55.33/29.40)	IQDALTLARTGKGPFIDIEHCLKVASPSRFLQLL
 1624- 1645 (23.98/13.24)	VISA.GLGGPIEGIKRLAIHVLT...........
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP06443 with Med5 domain of Kingdom Fungi
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