<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP06428

Description Mediator of RNA polymerase II transcription subunit 13
SequenceMSLADTDDVLAIELDVARVAYVSYTSTSTAAAQTSRHKLLQSNSGGLDDCYIPTVQVSAAGAVLWIFRILQASAEVDDILKFLGNLSNEGLQIKEEPQLFSPAHLYPCSEECSYQSKPCSHCINPPSTSSAPPRPPTSSASRLPRRSLRAVWSAFLQAARGSIIADIATRAENSASGRAVNRIKDGFLLGHAPSRLSPRSEWTAGWEGRIKGKPLVYTHIHLHLTGEKLIIHPTLHPTPFIPLAAKSLQQGAPITLLPYGTPAYYLSTYSGPTSTLAKQFREALQGCGVSLKFTAYVIIWIPVENAHGEEKGLTAIYPTELCVSFIPTPGTVPPLVHRSTTSSPISTAPPPFPTTGPWTPYGRSLLPTIPTLPPPLQPSPTVLHVVPPGFSAPSPNPAIVLSGSSYIPTPPATTLPVPVSATVPTSPYSTGHPVSSSFPPLFPPPYAISITPNERLSLALSRSYSLTFKARRQRQHKATFHSVQTSLSKSPDTILSLTHATEASGFVDMTAKEREKERERLRAGVSGRQTQDNQSSSQGQQSSTSQTRTAAPTQTQATEPVSHPPTIQTPYPNIAQPGPSTAHPFQPQQYPQSTFYPSPPDPHGSVPPIPLKVEVSDTIEQPITGPSQPEPPPQKIEPKDEESMDVDDDDLFGVSPPPSAENPDPIVKDSPKPEPPAVTETVDVKPDAERDDWDAMNMDWGAMDNMSMDLDMDMDMGMGMGMDMSMGMDAFGFGSSSSSSESKTVSSSLPVRPPLPPPPQTQPSVNAAVVTAPVAVRSVPTTVTSVSMTKPSSSLSFEDDITDDDYNWFDTHDTGGSERNDNTSGFMGISTSGGTNGSLDAGATLFSAISTSHPSAHSIQPFSSRSMHPPPVPPHAHHGFGYAPSPASTSASPWTSHAHIGHGETPDTMGTPSVAISMSASGDAFPLSPPEEGTPNIIGMLAGTPQTPNTAVINVTGGRWGSGWGVQLESPFSSPERKASTSTRATANSRRLSSFDPIPFAASHRLADGKYTCGKFTLPSPPLEGEEADSYFSAVGVKGNADTNGSSGLSPALKGLRINYDKKTDPRIAVVAQLRLRGVKRKSTASPALPGTRYMSPRWVKEWEEGLKATLPISPASMNDSDDDNSASDDEDNDSDDDLFDLGTSTSSPTAPEYSRPTTPLPAYVPPGPTLLSTHFHHTHLLPLSTPLRSPGTRHEETHLNNLSGNGSLNAAAASVPTPVSPAAMLGAAAEQSKSLEATAEMVAREVVENSLWGEIWTMNHCFGKHSDLSGTELCAVSDMSIDDGLNASMGPELAKQQVWTIDIHVVKELLSGVSGLKGPLTLGNVFDPVIPSVSVPHSPAPSTSHTVHPLQPPHLAVGKGDGVLEVLPTALRFWEKLGLGPKYGQKNATAFVLFDDDDEWCQQRVEVWLSNFAGTYQRKGLGNIVPGTSTFCSRDGLVPLRFDSSFRKNLASFATSLPASQTNFIFFVIIPSSAMILSSPLLRQVLSTVKKAVKNYSEAQIVFQLLPEEILLGHMDVSSVEDLGTEQLCYSVYDRILRPVDRTMAREFFEHGVRVRNYFQEPFTTLGRTLGQQKVTYVNSAHASLDVMDRHTLLHVGYQVSYCGKWILAAIIDQRGEAHDLGVWLARTHDSDADDAVSDEMHTVSKVWDFALRFAERADVEWRIVFAKLGLITAAELDAWTSLLASRLQVVSSRTPIHVSLLSIEPSAPWAIFPKRLKPSTPLSSQSSTSIAKAPALSRSSSMPSKASLKNGAPYFIDGSQTTYALFHNCSLTVSRAPTMESVGITSNIITDKPHGSSEGVRELPLLPLCSCTLVRMPASTSSPPTSIITPNMVDLHLMHAAGSRGSTYPPTSRNHSANDSEASTSHPSTATLHRGLMNDILYSYYALSVLSASRSKLSGVNPLLPFNLGAVEAMRNALSFGRIQVDGND
Length1931
PositionKinase
OrganismMoniliophthora roreri
KingdomFungi
LineageEukaryota> Fungi> Dikarya> Basidiomycota> Agaricomycotina> Agaricomycetes> Agaricomycetidae> Agaricales> Marasmiaceae> Moniliophthora.
Aromaticity0.07
Grand average of hydropathy-0.288
Instability index52.37
Isoelectric point5.84
Molecular weight207096.36
Publications









Function






Annotated function

Component of the SRB8-11 complex. The SRB8-11 complex is a
regulatory module of the Mediator complex which is itself involved in
regulation of basal and activated RNA polymerase II-dependent
transcription. The SRB8-11 complex may be involved in the
transcriptional repression of a subset of genes regulated by Mediator.
It may inhibit the association of the Mediator complex with RNA
polymerase II to form the holoenzyme complex.



GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
transcription coregulator activity	GO:0003712	IEA:InterPro

GO - Biological Process
regulation of transcription by RNA polymerase II	GO:0006357	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP06428
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      57.85|      15|      17|     696|     711|       1
---------------------------------------------------------------------------
  696-  711 (28.77/26.69)	MNMDWG.AMDnMSMDLD
  714-  729 (29.07/20.63)	MDMGMGmGMD.MSMGMD
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     899.73|     333|     487|     387|     873|       2
---------------------------------------------------------------------------
  330-  513 (133.61/53.87)	.............................................................................................................................................................................................................................................................................................................................................GTVPPLVHRSTTSSPISTAPPPFPTTGPWTpyGRSLLPtiPTLPpplqpsptvlhvvP.PGFSAPSPNPAIVLSGSSYIPTPPATTLPVPVSATVPTSPystghpvSSSFPPLFPPPYAiSiTPNERLSL.ALSRSYSLtfkarrqrqhKATFHSVQTSLskSPDTILS....LTHATEASgFVDMTAKE
  514-  661 (117.41/243.35)	REKERERL......RAGvSGRQTQ.DNQSSSQGQQSSTSQTRTAAPTQTQATEPVshpptiqtpyPNIAqpgpstAHPFQPQQYPQSTF.YPSPPDPHGSVPPIPLKVEVSDTIEQPitGPSQPEPPPQKIEPKDEESMD.....VDDDDLFGVSPPPSAE..........................................................................................................................................................................................................................................................................................................................................................................
  753-  944 (199.85/158.57)	.................................................................................................................................................................npdpivkdspkpeppavtetvdvkpdaerddwdamnmdwgamdnmsmdldmdmdmgmgmgmdmsmgmdafgfgssssssesktvssslpvrPPLPPPPQtqpsvnaavvTAPvavRSVPTTVTSVSMTKPSSSLSFEDdiTDDDYNWFDTHDtggserNDNTSGFMGISTSgGTNGSLDAGATLFSAISTSHPSAHSIQPFS..SRSMHP..PPVP...phahhgfgyaPsPASTSASPWTSHAHIGHG..ETPD..TMGTP.SVAISMSA.......SGDAFPLSPPEEG...TPN.........................................................IIGMLAGT
  945- 1246 (448.86/ -nan)	PQTPNTAVinvtggRWG.SGWGVQlESPFSSPERKASTSTRATANSRRLSSFDPI..........PFAA......SHRLADGKYTCGKFtLPSPPLEGEEADSYFSAVGVKGNADTN..GSSGLSPALKGLRINYDKKTDpriavVAQLRLRGVKRKSTAS...........................................................................................PALPGTRY..........MSP...RWVKEWEEGLKATLPISPASMND..SDDDNSASDDED......NDSDDDLFDLGTS..................TSSPTA....PEY..SRPTT.............................PLPAYVPPGPTLLSTHFHHTHLLPLSTPL.RSP.....................G.TRHEETHLnNLSGNGSL..........NAAAASVPTPV..SPAAMLGaaaeQSKSLEAT..AEMVARE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      72.60|      22|     943|     299|     324|       3
---------------------------------------------------------------------------
  299-  324 (32.10/29.29)	IWiPVENAHGEEKGLTAiypTELC.VS
 1256- 1278 (40.50/22.25)	IW.TMNHCFGKHSDLSG...TELCaVS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     142.64|      43|    1599|      63|     160|       4
---------------------------------------------------------------------------
  117-  160 (73.80/80.17)	KPcSHCINPPSTSSAPPRPPTSSASRLPRR.SLRAVWSAFLQAAR
 1719- 1762 (68.84/13.06)	KP.STPLSSQSSTSIAKAPALSRSSSMPSKaSLKNGAPYFIDGSQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      51.53|      15|     586|    1311|    1326|       5
---------------------------------------------------------------------------
 1311- 1326 (22.99/18.53)	LSGVSGLKgPLTLGNV
 1899- 1913 (28.53/17.51)	LSGVNPLL.PFNLGAV
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP06428 with Med13 domain of Kingdom Fungi
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