<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP06423

Description Actin-interacting protein 1 (Fragment)
SequenceLNFYHLEKKMNYHLENVFAALPRTTRGMPMVLNGDPKGNNFLYCNGNSVVIRDLENPKISDVYTEHSTLTTVAKYSPNGAYIASGDKSGKIRIWDTTQKEHILKKEYQPLPGAVRDIGWSEDGQRLAVVGDGREKFGHVFLFETGTSNGTLCGQTKALNSVDFRPVKPLRIVCASEDNSTAIFEGPPFKFKTLNYNHSRFAQCVRYAPDGQLFASCGADGKVFVYEGLEGSVVKEFVDPACKGKAHDGSAYALSWKSDGSQLLTASADKTCKIWDVETGNVVNLFLHRSILSTFKFGNSIDDQQLACLWQGDYLLSVSLGGCINYLDVNNPNKPRMIIKGHNKPITALAIDPSRDTVFTGDMEGKIVRWKESSGQAEEFTHQGHKSQVQSMVCTLSTLISVGMDDMLACSQQDDSNSHWSVKLGSQPQAVAVREGDPKLIAVACLNEVLLYNGSSLSARQTINYEASAIAIHPTENLLAVGSADNKIRLYEFSDAGSMQMLKEETHLGAITSLRFSIDGKYIAVADATRRLILYTAKTLEVVVRAVKNDWTFHLAKINCLAWCPDSRHIATGSLDTNIIVWDMENAGEHPLIIRGAKAARAHKMSQITNIEWWNNNTLVSTGQDANVKLWKISF
Length634
PositionTail
OrganismTrichinella sp. T8
KingdomMetazoa
LineageEukaryota> Metazoa> Ecdysozoa> Nematoda> Enoplea> Dorylaimia> Trichinellida> Trichinellidae> Trichinella> unclassified Trichinella.
Aromaticity0.09
Grand average of hydropathy-0.257
Instability index28.87
Isoelectric point6.85
Molecular weight70019.67
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP06423
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             6|     320.81|      49|      90|      83|     133|       1
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   83-  130 (74.94/53.05)	.ASGD...KSGKIRIWDTTQ..KEHILKKEYQP.LPGA.VRD.....IGWSEDGQRLAVVG
  131-  173 (39.73/28.97)	D....greKFGHVFLFETGT..SNGTLCGQTKA.LNSVdFRP.....V....KPLRIVC..
  174-  217 (59.32/40.17)	.ASED...NSTAI.FEGPPF..KFKTLNYNHSR.FAQC.VR........YAPDGQLFASCG
  219-  262 (37.97/23.22)	D.........GKVFVYEGLE..GS.VVKEFVDPaCKGK.AHDgsayaLSWKSDGSQL....
  265-  309 (63.27/43.43)	.ASAD...KTCK..IWDVET..GNVVNLFLHRS.ILST.FK......FGNSIDDQQLACLW
  482-  524 (45.59/28.85)	..SAD...N..KIRLYEFSDagSMQMLKEETH...LGA.ITS.....LRFSIDGKYIAV..
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      73.94|      23|      40|     339|     363|       3
---------------------------------------------------------------------------
  339-  363 (34.72/31.02)	KGHNKPITALAIDPSrdTVFTGDME
  382-  404 (39.22/27.35)	QGHKSQVQSMVCTLS..TLISVGMD
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     100.49|      30|     398|      31|      60|       4
---------------------------------------------------------------------------
   31-   60 (55.44/35.21)	VLNGDPKG......NNFLYCNGNSVVIRDLENPKIS
  432-  467 (45.05/27.35)	VREGDPKLiavaclNEVLLYNGSSLSARQTINYEAS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     136.40|      39|      47|     542|     581|       5
---------------------------------------------------------------------------
  542-  581 (67.58/47.91)	VVRAVKNDWTFHLAKINCLAWCPDSRHIATGSlDTNIIVW
  592-  630 (68.82/44.40)	IIRGAKAARAHKMSQITNIEWWNNNTLVSTGQ.DANVKLW
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP06423 with Med16 domain of Kingdom Metazoa
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