<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP06417
Description |
Mediator of RNA polymerase II transcription subunit 15 (Fragment) |
Sequence | LSLIMEDDWRSQRQREKVIQHLDNVIRSCTVPLNIPGDARQVENAIFLKASNQEEYMQFVSKIIYHASSGAAAMSQPQRHQAPVNQVPYGNMQPGTQFRRADMRPMQQPMQQQQQQQQQQQQQQVPGQIYSGMRAPPNAEMQPRLLRPMHQPSVTMHHMHQQQAQMGQMGMTQSAGIAAAAQQQPQNVVMLLTSGNPPRQAASAPSAVQLRQPNDIQQFLQQLPPAIRQQILQLPPEEQAEQLKKFFESRRWQQQQQLHQQQQIQQQQQQQQQQQQQQQQIQQQIQQHQQQQQQLQVQQQIQHQMHHVAQNQMHTQAVIQQQQQQQQQQQQQQQQQQQQQHQQQFASVRQQQQMQMLQPMMQQPGAVRFADQSTTMLYSRPPATPVMIPQTPAPVQQPPSQPAPVTPMSGQAASPNVNIGTPYPSSSPAGAHMMGPSPAYAAETSPVCHPAATPGPKTSQMSPAANSLPPESIGAEHSPYKEKVNELLVYLEPLKRLIEQTKESTSDSSQTQKFQRMVDILEGRNDTSMDVLLKCEETLKMICQKSDIIKVKDRNINQPLLDAISAITKPERQKINLYEYFNFPLYQCSLKNTCPDCLKGSCENETAQASNVEDSDQISIPLNIQREIGSLESKFRVTIDPSQRPLRSSCKFISVLCELLDITLPSVPPIYIRIPTNYPQSPPKYDLEWSQYCDSPYLNSIRKSLESFSSDTGAPNTISALLTNWETCVRDASFI |
Length | 735 |
Position | Tail |
Organism | Trichinella sp. T8 |
Kingdom | Metazoa |
Lineage | Eukaryota> Metazoa> Ecdysozoa> Nematoda> Enoplea> Dorylaimia>
Trichinellida> Trichinellidae> Trichinella> unclassified Trichinella.
|
Aromaticity | 0.05 |
Grand average of hydropathy | -0.814 |
Instability index | 78.12 |
Isoelectric point | 7.68 |
Molecular weight | 83535.35 |
Publications | |
Function
Annotated function |
Component of the Mediator complex, a coactivator involved in
the regulated transcription of nearly all RNA polymerase II-dependent
genes. Mediator functions as a bridge to convey information from gene-
specific regulatory proteins to the basal RNA polymerase II
transcription machinery. Mediator is recruited to promoters by direct
interactions with regulatory proteins and serves as a scaffold for the
assembly of a functional preinitiation complex with RNA polymerase II
and the general transcription factors.
ECO:0000256 RuleBase:RU364148
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GO - Cellular Component | mediator complex GO:0016592 IEA:InterPro
|
GO - Biological Function | transcription coregulator activity GO:0003712 IEA:InterPro
|
GO - Biological Process | regulation of transcription by RNA polymerase II GO:0006357 IEA:InterPro
|
Interaction
Repeat regions
Repeats |
>MDP06417
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
6| 473.15| 65| 65| 216| 280| 1
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16- 72 (53.18/ 9.30) ..........EKVIQHLDNVIRSCTVPLNIPGDARQVENaiFLKAS...NQEEY.....MQFVS..KIIYHASSGAA
73- 119 (72.70/15.32) AMSQP..QRHQAPVNQVPYG......NMQPGTQ.............fRRADMRP.....M..QQ..PMQQQQQQQQQ
120- 186 (86.65/19.62) QQQQQvpGQIYSGMRAPPNAEMQPRL.LRPMHQPSVTMH..HMH.....QQQAQmgqmgMTQSA..GIAAAAQQQPQ
209- 273 (116.62/28.87) QLRQP..NDIQQFLQQLPPAIRQQILQLPPEEQAEQLKK..FFESR.RWQQQQQ.....LHQQQ..QIQQQQQQQQQ
274- 328 (96.83/22.76) QQQQQ..QQIQQQIQQHQQ..QQQQLQVQQQIQ.HQMHH...V.......AQNQ.....MHTQA..VIQQQQQQQQQ
329- 357 (47.16/ 7.44) QQQQQ..QQ........................................QQQQQ......HQQQfaSVRQQQQMQML
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
3| 166.34| 46| 53| 382| 428| 2
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359- 393 (41.16/18.54) .............P.MMQQpGAV.RFADQS...TTMLYSRPPATPVMIPqTPA
394- 439 (91.47/43.01) PVQQPPSQPAPVTP.MSGQ.AAS.PNVNIG...TPYPSSSPAGAHMMGP.SPA
446- 480 (33.71/10.73) PVCHPAATPGPKTSqMSPA.ANSlPPESIGaehSPY.................
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 33.49| 10| 18| 625| 635| 3
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625- 635 (13.60/13.97) QREIGSlESKF
643- 652 (19.89/14.39) QRPLRS.SCKF
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