<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP06393

Description F-box-like/WD repeat-containing protein TBL1X
SequenceMATGEGENCSALPSDELNIGFDEDENCSTPPSSEHNRGFDEDANCSTPPADEHNSKFDEDEDCSTPRSAEHNIGFDEGENCSTPFSAEHNSEFDEDADCSTPTLAEHNIRFDEDEDCSTPSLSEIDSEFDVDSDCSTPTSVLSPFPEDQLNFLVWRFFKDHGYHVTAEMFAEDNAVEENCGVEDLSICKGSLKKLLEMLHFKSIVDGDIPQDGNLYDLVPGECFLSESSSSTTETASVDNSSEDSSFTAVELKCIMCTNYNSSICSLDWSFEEDLLLTGSADKVVRLWNMKDEKGETKNSYRKITCFEDENNGVNLPVSNGVVLVSWSPQGDLIASADSRGKIRICKKDGNFTINCFNVPEDIAVLKWNVTERLLLTATVDGVISLWSARTGDCVGCFTPFEDDVTDADWKDGATFTACSKDGMLFHCCITSTDASGPFNGHENSINVIKWDPTGNMAATGSSDMMVKVWRFGNEECVGCLKGHTAEVNTLGWHSTDQAILASGSEDGVVCVWDVINAEMLHMLNGHMTPLRMVAFRPETDMLISCSSDSVICLWNGRNGKRLRKIGNGDRATVNVMMWNRSGQMIAVGRQDGTASMETEETNVPEPVVVPSRRRIPTLRMESPIRAEDLHYLVWRFLKDTGQHRIAKQFELESQVLCSTLDSELPYVCFGSMEILMDALHKKCVQDGDIPEMGSLLELVPATLYHPSEVALSPDTDSSRSDSPFDHMLQITDIRPINTCKWGIKVLKILSKVGHNSDVSNCAWNPKEDFLLTGSVDKIVHLWNLENDITNVDENCVLASLDLTTLQVTDCRHLLPDLTFVAWSPDGDTAASVGLAGQFCIWKRDGSFLFTCTHPTHSILLLKWSTDGKHLLTASSNGIIVIWTASTGEIYADYGPFSTSVTDADWKDDSTFSVCFDNGTLFHCSPTDPFVMSTFEGHQMRVNMIRWDPAGKMMASCSDDRLVRIWRLNSQTYDFSLCGHTAEVDVLCWHDTDRAILASGSSDQSVRVWNVNRGEILYVFSFHTSPICTLEFRPGSDILASSGLDNRIMLWNVKVGGMLNEIENDDQKRIYELAWNRNGEKLAIAKADGLTSEIWSTLYEGIEFYNHQSLSNIDLYDSSRQYRTTYRIIFLHSCDAHYDMFNSSFQILHMQYSP
Length1154
PositionTail
OrganismTrichinella sp. T8
KingdomMetazoa
LineageEukaryota> Metazoa> Ecdysozoa> Nematoda> Enoplea> Dorylaimia> Trichinellida> Trichinellidae> Trichinella> unclassified Trichinella.
Aromaticity0.08
Grand average of hydropathy-0.313
Instability index42.18
Isoelectric point4.53
Molecular weight128583.09
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP06393
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             7|     206.31|      13|      16|      53|      65|       1
---------------------------------------------------------------------------
   17-   29 (29.28/14.17)	LNIGFDEDENCST
   35-   47 (30.31/14.92)	HNRGFDEDANCST
   53-   65 (30.92/15.36)	HNSKFDEDEDCST
   71-   83 (30.97/15.40)	HNIGFDEGENCST
   89-  101 (30.48/15.04)	HNSEFDEDADCST
  107-  119 (30.74/15.23)	HNIRFDEDEDCST
  125-  137 (23.60/10.03)	IDSEFDVDSDCST
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
            15|     635.77|      40|      40|     437|     476|       2
---------------------------------------------------------------------------
  260-  317 (34.16/13.64)	.YNS.....................SICSLDWSFEED.LLLTGSADKVVR.LWNMKDEKgetknsyrkitcfedenngVNL.P
  318-  358 (41.09/17.81)	V.SN.....................GVVLVSWSPQGD.LIASADSRGKIR.ICKKDGNF.................tiNCF.N
  359-  399 (46.56/21.11)	VPED......................IAVLKWNVTER.LLLTATVDGVIS.LWSARTGD.................cvGCF.T
  400-  440 (41.43/18.02)	PFED.....................DVTDADWKDGAT.FTACSKDGMLFH.C.CITSTD.................asGPF.N
  441-  482 (55.27/26.35)	GHEN.....................SINVIKWDPTGN.MAATGSSDMMVK.VWRFGNEE.................cvGCL.K
  483-  525 (47.02/21.39)	GHTA.....................EVNTLGWHSTDQaILASGSEDGVVC.VWDVINAE.................mlHML.N
  526-  568 (48.13/22.05)	GHMT.....................PLRMVAFRPETD.MLISCSSDSVIC.LWNGRNGK..............rlrkiG...N
  754-  791 (47.43/21.63)	GHNS.....................DVSNCAWNPKED.FLLTGSVDKIVH.LWNLENDI...................TN...
  792-  851 (37.68/15.76)	VDENcvlasldlttlqvtdcrhllpDLTFVAWSPDGD.TAASVGLAGQFC.IWK.RDGS...................FLF.T
  854-  895 (40.58/17.51)	HPTH.....................SILLLKWSTDGK.HLLTASSNGIIV.IWTASTGE.................iyADY.G
  896-  936 (36.29/14.93)	PFST.....................SVTDADWKDDST.FSVCFDNGTLFH..CSPTDPF.................vmSTF.E
  937-  978 (49.63/22.96)	GHQM.....................RVNMIRWDPAGK.MMASCSDDRLVR.IWRLNSQT.................ydFSL.C
  979- 1021 (47.52/21.69)	GHTA.....................EVDVLCWHDTDRaILASGSSDQSVR.VWNVNRGE.................ilYVF.S
 1022- 1064 (39.42/16.81)	FHTS.....................PICTLEFRPGSD.ILASSGLDNRIM.LWNVKVGG.................mlNEIeN
 1065- 1096 (23.56/ 7.25)	DDQK.....................RIYELAWNRNGE.KLAIAKADGLTSeIWS.............................
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     193.43|      41|      63|     146|     186|       3
---------------------------------------------------------------------------
  146-  186 (74.86/52.94)	PEDQLNFLVWRFFKDHGYHVTAEMFAE..................................DN........AVEENCGVEDLS
  192-  219 (45.12/28.59)	LKKLLEML...HFKSIV............................................DG........DIPQDGNLYDLV
  220-  254 (28.29/14.81)	PGE..CFL......SESSSSTTETASV..................................DNssedssftAVELKC......
  628-  700 (45.16/28.63)	..EDLHYLVWRFLKDTGQHRIAKQFELesqvlcstldselpyvcfgsmeilmdalhkkcvqDG........DIPEMGSLLELV
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP06393 with Med16 domain of Kingdom Metazoa


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) MATGEGENCSALPSDELNIGFDEDENCSTPPSSEHNRGFDEDANCSTPPADEHNSKFDEDEDCSTPRSAEHNIGFDEGENCSTPFSAEH
1
89










Molecular Recognition Features






MoRF SequenceStartStop




1) SALPSDELNIGFDEDE
10
25