<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP06380
Description |
Mediator of RNA polymerase II transcription subunit 15 (Fragment) |
Sequence | LDIFVVIISLFCYFFINLEHFFLCFLSLIMEDDWRSQRQREKVIQHLDNVIRSCTVPLNIPGDARQVENAIFLKANNQEEYMQFVSKIIYHASSGAAAMSQPQRHQAPVNQVPYGNMQPGTQFRRADMRPMQQPMQQQQQQQQQQQQQQQQQVAGQIYSGMRAPPNAEMQPRLLRPMHQASVTMHHMHQQQAAQMGQMGMTQSAGIAAAAQQQPQNVVMLLTSGNPPRQVASAPSAGQLRQPNDIQQFLQQLPPAIRQQILQLPPEEQAEQLKKFFESRRWQQQQQLHQQQQIQQQQQQQQQQQQQQQQQQQQIQQQIQHQQQQQQQQQQLQAQQQIQHQIHHVAQNQMHPQAVIQQQQQQQQQQQQQQQQQHQQHQQQFASVRQQQQMQMLQPMMQQPGAVRFADQSTMLYSRPPATPAMMPHTPAPVQQPPSQPAPVTPMSGQAASPNVNMGTPYPSSSPAGAHMMGPSPAYAAETSPVCHPVATPCPKTSQGDYYDGLFCNCYSMVFLLPVSPAAQNSLPPESIGAEHSPYKEKVNELLVYLEPLKRLIEQTKESTSDSSQTQKFQRMVDILEGRNDTSMDVLLKCEETLKMICQKSEVIKVKDRNINQPLLDAISAITKRERQKINLYEYFNFPLYQCSLKNTCVDTLNRIFSFIRKVTVFSPDCLKGMCENETAQTSNVEDSDQIGIPLNIQREIGNLESKFRVTIDPSQRPLRSSCKFISVLCELLDITLPSVPPIYIRIPTNYPQSPPKYDLEWSQYGDSPYLNSIRKSLESFSSDTGAPNTISALLTNWETCVRDASFI |
Length | 807 |
Position | Tail |
Organism | Trichinella papuae |
Kingdom | Metazoa |
Lineage | Eukaryota> Metazoa> Ecdysozoa> Nematoda> Enoplea> Dorylaimia>
Trichinellida> Trichinellidae> Trichinella.
|
Aromaticity | 0.06 |
Grand average of hydropathy | -0.701 |
Instability index | 71.96 |
Isoelectric point | 7.35 |
Molecular weight | 92262.43 |
Publications | |
Function
Annotated function |
Component of the Mediator complex, a coactivator involved in
the regulated transcription of nearly all RNA polymerase II-dependent
genes. Mediator functions as a bridge to convey information from gene-
specific regulatory proteins to the basal RNA polymerase II
transcription machinery. Mediator is recruited to promoters by direct
interactions with regulatory proteins and serves as a scaffold for the
assembly of a functional preinitiation complex with RNA polymerase II
and the general transcription factors.
ECO:0000256 RuleBase:RU364148
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GO - Cellular Component | integral component of membrane GO:0016021 IEA:UniProtKB-KW
mediator complex GO:0016592 IEA:InterPro
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GO - Biological Function | transcription coregulator activity GO:0003712 IEA:InterPro
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GO - Biological Process | regulation of transcription by RNA polymerase II GO:0006357 IEA:InterPro
|
Interaction
Repeat regions
Repeats |
>MDP06380
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
6| 475.95| 61| 61| 293| 353| 1
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76- 143 (79.67/15.21) NNQEEYMQFVSKIIYHASS.....GAAAM....SQ...PQRHQAPVNQVPYGNM...QPgtqfrradmRP...........MQQpMQQQQQQQQ
144- 193 (79.40/15.14) QQQQQQQQQVAGQI..............Y....SGMRAPPNAEMQPRLL..RPM...HQ.........AS...........VTM.HHMHQQQAA
194- 250 (73.49/13.52) QMGQMGMTQSAGIAAAAQQ.....QPQNV....VMLLTSGNPPRQVASA.........P.........SA.........gqLRQ.PNDIQQFLQ
251- 304 (67.29/11.81) QLPPAIRQQILQLPPEEQA.....EQLKKffesRRWQQQQQ............L...HQ.........QQ..........qIQQ.QQQQQQQQQ
305- 366 (111.08/23.84) QQQQQQQQQIQQQIQHQQQ.....QQQQQ....QQLQAQQQIQHQIHHVAQNQM...HP.........QA..........vIQQ.QQQQQQQQQ
367- 435 (65.02/11.19) QQQQQQHQ......QHQQQfasvrQQQQM....QMLQPMMQQPGAVRFADQSTMlysRP.........PAtpammphtpapVQQ.PPSQ.....
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
3| 95.83| 20| 51| 461| 480| 2
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419- 441 (22.12/ 7.82) .PA...MMPHTPAPvqqppsqPAPVTP
461- 480 (39.71/19.88) SPAGAHMMGPSPAY.......AAETSP
515- 533 (34.01/15.97) SPAAQNSL.PPESI.......GAEHSP
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