<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP06364

Description Ectonucleoside triphosphate diphosphohydrolase 1
SequenceMDEGRKNISARKAMLLKEYQVLLQRSVKSIRENFTEIIKMAKIGDDGQVSRLTEYEHELFEMQIRAANMTHAAEALIKMVTDLKQFLILNDFAYINESITTSAVHNQIAQREFRDKLIAVKEEMTYCLQEAEQEYYNTALKNSVSVLDLFEIEFLRIKMTLDEFGTELYVDPWQTFVSIKGKLRKRAFRSPNLAEVVKDYEALANRLLDENCTEYSALCRMNMAKCKNQLGNIDQEAVEYRTAGRLYIRAEKEKESVENRLSMECLYMAMHCYNEAIRLHLSQGQKLLAASLLIELGKELACMQHPEDAIQNFEKAVHLLDTHPHAVGHALRWKLCVETSVGFLADARRTSNFYRQIVESWPNSGSRKLHLNELEIITVMLLLALKPIKSEMNDFEKRLLQRYSDETDEALFTNDGSLLPNDSYIISVEIYLQLKSFVLAINNNDPSAADIALTAMHHHNVKLVHSTGSDASVPLRVLIKSLFYNESSVSLEVDSDFKVKDVINAYAYRTGRNEKDEEFVLRFHDHSSLNSEDVLHVLGVYNDEELIISVRGEDSRRSRNSWWWLGSVALLISLVGLIAVSVLFALSGDLPDEFGIIIDAGSSHSGLYIYTWNGRKNKTGVIKQYAPSCSTEMGISSFTDNPADAGNSLMFCLNNASATIPSKRHSATAMYLAATAGMRILELRDPLSSCKILSAVSNTMHSYNFLFKNASIISGIDEGIYGWITSNFLSHRLMNSASRLNDIRPLTIGAMDLGGASTQIIFEINSSEFTERNYSLRLFGETYNLFVDSYLCCGLNEVQRIIQAQIVAEDMTNQRPLHPCMPLNYTMNVTSEQIFSMPCSLNQKPNNVLPNYVFRGSSDPHSCLMKIRHMLDTSACSVKKAKIPKPRGEFMAFSGLYWAAKFFNCTSGCSYNKFFENVQNYCEKSWSYIEAAAYPYKKTFLPTYCFIGLYSLTLIKDAYHFSDAQIQDIKFVNEIDSTEIGWTLGFMLNATNQLPEEQPIEHIGLIEFSLITTICCIIRLEQLE
Length1024
PositionHead
OrganismTrichinella papuae
KingdomMetazoa
LineageEukaryota> Metazoa> Ecdysozoa> Nematoda> Enoplea> Dorylaimia> Trichinellida> Trichinellidae> Trichinella.
Aromaticity0.09
Grand average of hydropathy-0.165
Instability index37.13
Isoelectric point5.70
Molecular weight116306.71
Publications









Function






Annotated function


GO - Cellular Component
integral component of membrane	GO:0016021	IEA:UniProtKB-KW
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
ATP binding	GO:0005524	IEA:UniProtKB-KW
hydrolase activity	GO:0016787	IEA:UniProtKB-KW
transcription coregulator activity	GO:0003712	IEA:InterPro

GO - Biological Process
regulation of transcription by RNA polymerase II	GO:0006357	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP06364
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      81.94|      19|      22|     205|     223|       1
---------------------------------------------------------------------------
  205-  223 (35.65/24.98)	NRL..LDENCTEYSALCRMNM
  228-  248 (25.15/15.30)	NQLgnIDQEAVEYRTAGRLYI
  259-  272 (21.14/11.60)	NRL..SME.CLYMAMHC....
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      86.07|      24|      25|     516|     539|       2
---------------------------------------------------------------------------
  516-  539 (41.29/28.15)	DEEFVLRFHDHSSLNSEDVLHVLG
  543-  566 (44.78/31.18)	DEELIISVRGEDSRRSRNSWWWLG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      81.49|      25|      27|     805|     831|       3
---------------------------------------------------------------------------
  805-  831 (38.94/34.27)	QIVAEDMT.NQRPlHPCMPlNYTMNVTS
  833-  858 (42.56/27.38)	QIFSMPCSlNQKP.NNVLP.NYVFRGSS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      38.28|      10|      23|     911|     922|       4
---------------------------------------------------------------------------
  911-  922 (16.97/18.99)	YNKFFenVQNYC
  936-  945 (21.31/14.70)	YKKTF..LPTYC
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      40.74|      13|      25|     704|     716|       6
---------------------------------------------------------------------------
  704-  716 (22.96/13.66)	NF....LFKNASIISGI
  727-  743 (17.78/ 8.99)	NFlshrLMNSASRLNDI
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP06364 with Med22 domain of Kingdom Metazoa
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