<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP06316

Description Actin-interacting protein 1 (Fragment)
SequenceLNFYHLEKKMNYHLENVFAALPRTTRGMPMVLNGDPKGNNFLYCNGNSVVIRDLQNPKISDVYTEHSTLTTVAKYSPNGAYIASGDKSGKIRIWDTTQKEHILKKEYQPLPGAVRDIGWSEDGQRLAVVGDGREKFGHVFLFETGTSNGTLCGQTKALNSVDFRPVKPLRIVCASEDNSTAIFEGPPFKFKTLNYNHSRFAQCVRYAPDGQLFASCGADGKVFVYEGLEGSVVKEFVDPACKGKAHDGSAYALSWKSDGSQLLTASADKTCKIWDVETGNVVNLFLHRSILSTFKFGNSIDDQQLACLWQGDYLLSVSLGGCINYLDVNNPNKPRMIIKGHNKPITALAIDPSRDTVFTGDMEGKIVRWKESSGQAEEFTHQGHKSQVQSMVCTLSTLISVGMDDMLACSQQDDSNSHWSVKLGSQPQAVAVREGDPKLIAVACLNEVLLYNGSSLSARQTINYEASAIAIHPTENLLAVGSAVGLAIFSQNDNKIRLYEFSDAGSMQMLKEETHLGAITSLRFSIDGKYIAVADATRRLILYTAKTLEVVVRAVKNDWTFHLAKINCLAWCPDSRHIATGSLDTNIIVWDMENAGEHPLIIRGAHKMSQITNIEWWNNNTLVSTGQDANVKLWKISF
Length638
PositionTail
OrganismTrichinella nativa
KingdomMetazoa
LineageEukaryota> Metazoa> Ecdysozoa> Nematoda> Enoplea> Dorylaimia> Trichinellida> Trichinellidae> Trichinella.
Aromaticity0.09
Grand average of hydropathy-0.237
Instability index29.56
Isoelectric point6.68
Molecular weight70451.15
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP06316
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             5|     243.15|      46|      46|     498|     543|       1
---------------------------------------------------------------------------
   75-  118 (57.03/35.70)	YSPNGAYIASGDKSGKI.........rI.WDTTQ.K.EHIL....KKEY..QP.LpGAVRDIG
  206-  254 (57.14/35.78)	YAPDGQLFASCGADGKVFVYeglegsvV.KEFVD.PAC........KGK..AH.D.GSAYALS
  498-  523 (26.51/12.76)	...........................L.YEFSD.AGSMQM....LKEE..TH.L.GAITSLR
  524-  570 (42.58/24.84)	FSIDGKYIAVADATRRLILY..............tAKTLEVvvraVKNDwtFH.L.AKINCLA
  571-  615 (59.91/37.86)	WCPDSRHIATGSLDTNII..........vWDMEN.AGEHPL....IIRG..AHkM.SQITNIE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      93.26|      28|     101|     291|     320|       3
---------------------------------------------------------------------------
  291-  320 (44.56/43.34)	LSTFkFGNSIDDqQLACLWQGD..YLLSVSLG
  395-  424 (48.70/36.06)	LSTL.ISVGMDD.MLACSQQDDsnSHWSVKLG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     122.71|      37|     405|      31|      68|       4
---------------------------------------------------------------------------
   31-   68 (64.36/47.28)	VLNGDPK......GNNFLYCNGNSVVIRDLQNPKISDVYTeHST
  432-  474 (58.34/38.00)	VREGDPKliavacLNEVLLYNGSSLSARQTINYEASAIAI.HPT
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP06316 with Med16 domain of Kingdom Metazoa
Unable to open file!