<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP06302

Description Vacuolar protein sorting-associated protein 11-like protein (Fragment)
SequenceMSQQNQNSFIQTFPLPPRPLNSNGNNLDANYGYPQGIGPSSVSSPIQSLVNSFGSRREVPSPSPASVSESTNVAPGKTTQADESQQEHHAEREAWSAQGSKAFNVNPFFAFSMSQILQSNDNNGPLALCIIGRDFTREVINRTCDICGALKSLQLPTAPEAVKQHQDKLQRINESLKQVNIILERLEAIDRKIDNFRKELLPADAEDHLKDLVTYDGKNEWLRKLTEERKSREVFTQTKQQYDEVKKELETHAPSCSARSFNFCSLKLAQFDPREFGLRLKPYIANSDDIHIPFRRPFFSCTNSLIYPDYNSYFIPIIRNLSSKKSKNDSVSESLVKRRVSFNFSAVYSQVVNQCSSTEKSPTHYFERGKPNWDQLQHVIYRLSETVPTFFLRRLDYTFYSDDVLFLNRICGSEVKGLRNYWLHLATLSVLSRIPCPYIEMKILNCMPIVEEGSVHLRWRVLYLTVPEFLYVVVRERSADIETLRRNARWFDGFSYFYVGSDGLVYKHVADRVMRDPEEIAANSKRVGLLNRLLGSSARSPIWKQFNLDKEKKNLVDSYGLSIQLILATLAFASLIVKRLLEPKQTRRPWTIWFFDTSKQAVGSSVIHAMNIFLAGVFRGDPCTWYFVSFLLDSTLGLLIIYTGVKLVTAAASCRKDWSTLRFGEYGDPPQCRPWLHQCLAFVILSVIEKFFVTLLLLMRFWKSVREIALSPIRNPKVEVTLVILVFPFLINTIMFWVVDNFTMKRRAVSKKFNSNNSNSLIIANNGSSSSGIRRVHDESAVKLLDEYDNNSQQNDALALFPADNILQHRNSSTLAGIFVFFIHFNSDCESSTIIMASSLFQSWRRLVFFDRQLIADVENADESFTEFKDLNIACVAWKSNRVFIGEVDGGVHMYDKDFNDTYFKAYKVNLSLLYCPRSSDSLVSIGEDDNGVNPYLKVWLLDKLDKQGKPFAVRCSKTSPGNRPVKVTSVAVDSSGQLMVVGFEDSSILLYRGDVCKEKQPKSQLIRDGSTCASEGSIVGMELCDHSSQAVILYVVTTRFTFSFTISFKEKDITKTVLEMEGLHMRRCWALAGEELKNQFVVARNMGFYFYQPEEKGGCQIFRGNKKILLSHGPYLIVVSELSVSNEINDDKVTLTVYDMQNSFIAYEASFPDISEVFIAWNFIFILCMESGKLFRLKEMSIESQLDILFRKNLFDLAISIGEKQCQQEGTVEYLSILRGLFLQVRLDTDCFQCFEVELLKNRKRDYSNALKQYMRTIGTLDTSYVIRKLLDAHRIENLAEYLEAVFHAKLGTVDHSNVLLSCYIKMNAIDKINSFIQNKETVAPLDVEAAVKLFRKFGLYRQAAFLTKRHGYPKRCLDLLVSDLKDFKQAINYISSLESDVIAEFFTRYSKLLLENVPEETMTLLGEILKRDGCSEKNWVQSVVLRLIAHPDRLEAFLEQSLMANKVDVKLYNLLLYAYLRRYSSTMENDVAKEQISRKIDQLLKNISSDSQSLLEALRFCYQWAYHPGILYLLERQKMYSHLLKHQMFLKDYDSVISACLKYGDRRSGDKTLWSFALQYFSEDPTISEEYVKKLLTSSELTGDVHPMLAVQTLAKSKTLTFACVKVGSCGGHLPACFVDFLSHWVDKESKSIEMDEQDSLRLCNEIKRTEAIIDDIQKNPQIFQMSKCTACDIILETPTVHFLCKHSYHQHCFENYAESEAECPVCLLDKKRFQNQCKTDSSTSSEALNHSFKEELMNTNNVIGTLTSYFGKTLFPDKDVDAENCEIHQQDTSKSVQSLNPFEVW
Length1788
PositionHead
OrganismTrichinella nativa
KingdomMetazoa
LineageEukaryota> Metazoa> Ecdysozoa> Nematoda> Enoplea> Dorylaimia> Trichinellida> Trichinellidae> Trichinella.
Aromaticity0.11
Grand average of hydropathy-0.228
Instability index46.52
Isoelectric point7.17
Molecular weight204725.92
Publications









Function






Annotated function


GO - Cellular Component
integral component of membrane	GO:0016021	IEA:UniProtKB-KW
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
metal ion binding	GO:0046872	IEA:UniProtKB-KW

GO - Biological Process
intracellular protein transport	GO:0006886	IEA:UniProtKB-UniRule
vesicle-mediated transport	GO:0016192	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP06302
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      53.41|      17|      31|    1252|    1268|       1
---------------------------------------------------------------------------
 1252- 1268 (30.46/21.66)	LKQYMRTI.....GTLDTSYVI
 1280- 1301 (22.95/14.38)	LAEYLEAVfhaklGTVDHSNVL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      47.45|      13|     120|     401|     413|       2
---------------------------------------------------------------------------
  401-  413 (24.82/16.42)	SDDVLFLNRICGS
  524-  536 (22.63/14.23)	SKRVGLLNRLLGS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      22.02|      13|     120|     628|     685|       4
---------------------------------------------------------------------------
  582-  632 ( 3.89/51.78)	EPKQTrRPWtiwffdtskqavgssvihamniflagvfrgdpctwyfVSFLL
  668-  697 (18.13/11.30)	DPPQC.RPW....................lhqclafvilsviekffVTLLL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     126.17|      28|     120|    1078|    1105|       5
---------------------------------------------------------------------------
 1078- 1105 (54.40/36.44)	KNQFVVARNMGFYFYQPEEKGGC.QIFRG
 1159- 1178 (30.54/16.97)	...F.IAWN..FIFILCMESG...KLFRL
 1193- 1221 (41.23/25.69)	KNLFDLAISIGEKQCQQEGTVEYlSILRG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     199.11|      63|    1133|     310|     383|       7
---------------------------------------------------------------------------
  310-  383 (90.52/83.73)	YNSYFIPIIRNLSSkKSKNDsVSESLVKRRVsfnfsavySQVVNQCSSTEKSPTHYFeRGKPNWDQLQHVIYRL
 1454- 1516 (108.59/67.90)	YNLLLYAYLRRYSS.TMEND.VAKEQISRKI........DQLLKNISSDSQSLLEAL.RFCYQWAYHPGILYLL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      79.47|      23|     437|     915|     937|       8
---------------------------------------------------------------------------
  883-  896 (18.87/ 9.22)	..............VFIGEVDGGVHMYD
  915-  937 (43.72/32.81)	YCPRSSD.....SLVSIGEDDNGVNPYL
  955-  977 (16.88/ 7.33)	RCSKTSPgnrpvKVTSVAVDSSG.....
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      67.89|      20|      32|     458|     477|      19
---------------------------------------------------------------------------
  458-  477 (35.80/23.72)	RW....RVLYLTVPEFLYVVVRER
  489-  512 (32.09/20.43)	RWfdgfSYFYVGSDGLVYKHVADR
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP06302 with Med30 domain of Kingdom Metazoa
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