<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP06298

Description Vacuolar protein sorting-associated protein 11-like protein (Fragment)
SequenceMSQQNQNSFIQTFPLPPRPLNSNGNNLDANYGYPQGIGPSSVSSPIQSLVNSFGSRREVPSPSPASVSESTNVAPGKTTQADESQQEHHAEREAWSAQGSKAFNVNPFFAFSMSQILQSNDNNGPLALCIIGRDFTREVINRTCDICGALKSLQLPTAPEAVKQHQDKLQRINESLKQVNIILERLEAIDRKIDNFRKELLPADAEDHLKDLVTYDGKNEWLRKLTEERKSREVFTQTKQQYDEVKKELETHAPSCSARSFNFCSLKLAQFDPREFGLRLKPYIANSDDIHIPFRRPFFSCTNSLIYPDYNSYFIPIIRNLSSKKSKNDSVSESLVKRRVSFNFSAVYSQVVNQCSSTEKSPTHYFERGKPNWDQLQHVIYRLSETVPTFFLRRLDYTFYSDDVLFLNRICGSEVKGLRNYWLHLATLSVLSRIPCPYIEMKILNCMPIVEEGSVHLRWRVLYLTVPEFLYVVVRERSADIETLRRNARWFDGFSYFYVGSDGLVYKHVADRVMRDPEEIAANSKRVGLLNRLLGSSARSPIWKQFNLDKEKKNLVDSYGLSIQLILATLAFASLIVKRLLEPKQTRRPWTIWFFDTSKQAVGSSVIHAMNIFLAGVFRGDPCTWYFVSFLLDSTLGLLIIYTGVKLVTAAASCRKDWSTLRFGEYGDPPQCRPWLHQCLAFVILSVIEKFFVTLLLLMRFWKSVREIALSPIRNPKVEVTLVILVFPFLINTIMFWVVDNFTMKRRAVSKKFNSNNSNSLIIANNGSSSSGIRRVHDESAVKLLDEYDNNSQQNDALALFPADNILQHRNSSTLAGIFVFFIHFNSDCESSTIIMASSLFQSWRRLVFFDRQLIADVENADESFTEFKDLNIACVAWKSNRVFIGEVDGGVHMYDKDFNDTYFKAYKVNLSLLYCPRSSDSLVSIGEDDNGVNPYLKVWLLDKLDKQGKPFAVRCSKTSPGNRPVKVTSVAVDSSGQLMVVGFEDSSILLYRGDVCKEKQPKSQLIRDGSTCASEGSIVGMELCDHSSQAVILYVVTTRFTFSFTISFKEKDITKTVLEMEGLHMRRCWALAGEELKNQFVVARNMGFYFYQPEEKGGCQIFRGNKKILLSHGPYLIVVSELSVSNEINDDKVTLTVYDMQNSFIAYEASFPDISEVFIAWNFIFILCMESGKLFRLKEMSIESQLDILFRKNLFDLAISIGEKQCQQEGTVEYLSILRGLFLQVRLDTDCFQCFEVELLKNRKRDYSNALKQYMRTIGTLDTSYVIRKLLDAHRIENLAEYLEAVFHAKLGTVDHSNVLLSCYIKMNAIDKINSFIQNKETVAPLDVEAAAGGFFDQASRLSETLLGLARVRFERFQTSNQLHLFIGIGCVKRDGCSEKNWVQSVVLRLIAHPDRLEAFLEQSLMVITFHCSSFSSSIFTRLVDGYSAICEQANKVDVKLYNLLLDRRSGDKTLWSFALQYFSEDPTISEEYVKKLLTSSELTGDVHPMLAVQTLAKSKTLTFACVKVGSCGGHLPACFVDFLSHWVDKESKSIEMDEQDSLRLCNEIKRTEAIIDDIQKNPQIFQMSKCTACDIILETPTVHFLCKHSYHQQKLFHSALEKVALLMCFDLMWSKSVFRRFQNQCKTDSSTSSEALNHSFKEELMNTNNVIGTLTSYFGKTLFPDKDVDAENCEIHQQDTSKSVQSLNPFEVW
Length1695
PositionHead
OrganismTrichinella nativa
KingdomMetazoa
LineageEukaryota> Metazoa> Ecdysozoa> Nematoda> Enoplea> Dorylaimia> Trichinellida> Trichinellidae> Trichinella.
Aromaticity0.11
Grand average of hydropathy-0.189
Instability index44.58
Isoelectric point7.16
Molecular weight193315.87
Publications









Function






Annotated function


GO - Cellular Component
integral component of membrane	GO:0016021	IEA:UniProtKB-KW
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP06298
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     152.64|      43|      62|    1505|    1547|       1
---------------------------------------------------------------------------
 1505- 1547 (78.69/51.08)	FACVKVGSCGGHLPACFVDFLSHWVDKESKSIEMD.EQDSLRLC
 1567- 1610 (73.95/47.54)	FQMSKCTACDIILETPTVHFLCKHSYHQQKLFHSAlEKVALLMC
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     162.28|      52|      62|    1247|    1301|       2
---------------------------------------------------------------------------
 1247- 1301 (81.53/64.35)	DYSNALKQYMRTIGTLDTSYVIRKLLD.AHRienLAEYLEAVFHAKLGTVDHSNVL
 1312- 1364 (80.75/55.59)	DKINSFIQNKETVAPLDVEAAAGGFFDqASR...LSETLLGLARVRFERFQTSNQL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     147.28|      48|     418|     284|     336|       3
---------------------------------------------------------------------------
  284-  336 (81.06/64.45)	IANSddihiPFRRPFFSCT.NSLIYP.DYNSYFIPIIRNLSSKK...SK..NDSVSESLV
  708-  762 (66.22/41.49)	IALS.....PIRNPKVEVTlVILVFPfLINTIMFWVVDNFTMKRravSKkfNSNNSNSLI
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      39.23|      10|     423|     979|     988|       4
---------------------------------------------------------------------------
  979-  988 (18.78/11.03)	LMVVGFEDSS
 1406- 1415 (20.46/12.71)	LMVITFHCSS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      69.42|      19|      65|     577|     595|       8
---------------------------------------------------------------------------
  577-  595 (37.51/20.35)	VKRLLEPKQTRRPWTIWFF
  645-  663 (31.92/16.28)	VKLVTAAASCRKDWSTLRF
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP06298 with Med30 domain of Kingdom Metazoa
Unable to open file!