<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP06297

Description Vacuolar protein sorting-associated protein 11-like protein (Fragment)
SequenceMSQQNQNSFIQTFPLPPRPLNSNGNNLDANYGYPQGIGPSSVSSPIQSLVNSFGSRREVPSPSPASVSESTNVAPGKTTQADESQQEHHAEREAWSAQGSKAFNVNPFFAFSMSQILQSNDNNGPLALCIIGRDFTREVINRTCDICGALKSLQLPTAPEAVKQHQDKLQRINESLKQVNIILERLEAIDRKIDNFRKELLPADAEDHLKDLVTYDGKNEWLRKLTEERKSREVFTQTKQQYDEVKKELETHAPSCSARSFNFCSLKLAQFDPREFGLRLKPYIANSDDIHIPFRRPFFSCTNSLIYPDYNSYFIPIIRNLSSKKSKNDSVSESLVKRRVSFNFSAVYSQVVNQCSSTEKSPTHYFERGKPNWDQLQHVIYRLSETVPTFFLRRLDYTFYSDDVLFLNRICGSEVKGLRNYWLHLATLSVLSRIPCPYIEMKILNCMPIVEEGSVHLRWRVLYLTVPEFLYVVVRERSADIETLRRNARWFDGFSYFYVGSDGLVYKHVADRVMRDPEEIAANSKRVGLLNRLLGSSARSPIWKQFNLDKEKKNLVDSYGLSIQLILATLAFASLIVKRLLEPKQTRRPWTIWFFDTSKQAVGSSVIHAMNIFLAGVFRGDPCTWYFVSFLLDSTLGLLIIYTGVKLVTAAASCRKDWSTLRFGEYGDPPQCRPWLHQCLAFVILSVIEKFFVTLLLLMRFWKSVREIALSPIRNPKVEVTLVILVFPFLINTIMFWVVDNFTMKRRAVSKKFNSNNSNSLIIANNGSSSSGIRRVHDESAVKLLDEYDNNSQQNDALALFPADNILQHRNSSTLAGIFVFFIHFNSDCESSTIIMASSLFQSWRRLVFFDRQLIADVENADESFTEFKDLNIACVAWKSNRVFIGEVDGGVHMYDKDFNDTYFKAYKVNLSLLYCPRSSDSLVSIGVRAFEDDNGVNPYLKVWLLDKLDKQGKPFAVRCSKTSPGNRPVTSVAVDSSGQLMVVGFEDSSILLYRGDVCKEKQPKSQLIRDGSTCASEGSIVGMELCDHSSQAVILYVVTTRFTFSFTISFKEKDITKTVLEMEGLHMRRCWALAGEELKNQFVVARNMGFYFYQPEEKGGCQIFRGNKKILLSHGPYLIVVSELSVSNEINDDKVTLTVYDMQNSFIAYEASFPDISEVFIAWNFIFILCMESGKLFRLKEMSIESQLDILFRKNLFDLAISIGEKQCQQEGTVEYLSILRGLFLQVRLDTDCFQCFEVELLKNRKRDYSNALKQYMRTIGTLDTSYVIRKLLDAHRIENLAEYLEAVFHAKLGTVDHSNVLLSCYIKMNAIDKINSFIQNKETVAPLDVEAAVKLFRKFGLYRQAAFLTKRHGYPKRCLDLLVSDLKDFKQAINYISSLESDVIAEFFTRYSKLLLENVPEETMTLLGEILKRDGCSEKNWVQSVVLRLIAHPDRLEAFLEQSLMANKVDVKLYNLLLYAYLRRYSSTMENDVAKEQISRKIDQLLKNISSDSQSLLEALRFCYQWAYHPGILYLLERQKMYSHLLKHQMFLKDYDSVISACLKYGDRRSGDKTLWSFALQYFSEDPTISEEYVKKLLTSSELTGDVHPMLAVQTLAKSKTLTFACVKVGSCGGHLPACFVDFLSHWVDKESKSIEMDEQDSLRLCNEIKRTEAIIDDIQKNPQIFQMSKCTACDIILETPTVHFLCKHSYHQHCFENYAESEAECPVCLLDKKRFQNQCKTDSSTSSEALNHSFKEELMNTNNVIGTLTSYFGKTLFPDKDVDAENCEIHQQDTSKSVQSLNPFEVW
Length1790
PositionHead
OrganismTrichinella nativa
KingdomMetazoa
LineageEukaryota> Metazoa> Ecdysozoa> Nematoda> Enoplea> Dorylaimia> Trichinellida> Trichinellidae> Trichinella.
Aromaticity0.11
Grand average of hydropathy-0.226
Instability index46.59
Isoelectric point7.17
Molecular weight204972.19
Publications









Function






Annotated function


GO - Cellular Component
integral component of membrane	GO:0016021	IEA:UniProtKB-KW
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
metal ion binding	GO:0046872	IEA:UniProtKB-KW

GO - Biological Process
intracellular protein transport	GO:0006886	IEA:UniProtKB-UniRule
vesicle-mediated transport	GO:0016192	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP06297
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      53.41|      17|      31|    1254|    1270|       1
---------------------------------------------------------------------------
 1254- 1270 (30.46/16.20)	LKQYMRTI.....GTLDTSYVI
 1282- 1303 (22.95/10.71)	LAEYLEAVfhaklGTVDHSNVL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      47.45|      13|     120|     401|     413|       2
---------------------------------------------------------------------------
  401-  413 (24.82/13.08)	SDDVLFLNRICGS
  524-  536 (22.63/11.34)	SKRVGLLNRLLGS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      22.02|      13|     120|     628|     685|       4
---------------------------------------------------------------------------
  582-  632 ( 3.89/45.72)	EPKQTrRPWtiwffdtskqavgssvihamniflagvfrgdpctwyfVSFLL
  668-  697 (18.13/ 9.80)	DPPQC.RPW....................lhqclafvilsviekffVTLLL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     126.17|      28|     120|    1080|    1107|       5
---------------------------------------------------------------------------
 1080- 1107 (54.40/34.62)	KNQFVVARNMGFYFYQPEEKGGC.QIFRG
 1161- 1180 (30.54/16.10)	...F.IAWN..FIFILCMESG...KLFRL
 1195- 1223 (41.23/24.39)	KNLFDLAISIGEKQCQQEGTVEYlSILRG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     199.11|      63|    1135|     310|     383|       8
---------------------------------------------------------------------------
  310-  383 (90.52/87.67)	YNSYFIPIIRNLSSkKSKNDsVSESLVKRRVsfnfsavySQVVNQCSSTEKSPTHYFeRGKPNWDQLQHVIYRL
 1456- 1518 (108.59/71.12)	YNLLLYAYLRRYSS.TMEND.VAKEQISRKI........DQLLKNISSDSQSLLEAL.RFCYQWAYHPGILYLL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      73.90|      23|      29|     928|     956|      12
---------------------------------------------------------------------------
  928-  954 (33.87/31.12)	VRAFEDDNGVNPYLKVwlldKLDKQGK
  958-  980 (40.04/18.22)	VRCSKTSPGNRPVTSV....AVDSSGQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      67.89|      20|      32|     458|     477|      18
---------------------------------------------------------------------------
  458-  477 (35.80/22.06)	RW....RVLYLTVPEFLYVVVRER
  489-  512 (32.09/19.02)	RWfdgfSYFYVGSDGLVYKHVADR
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP06297 with Med30 domain of Kingdom Metazoa
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