<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP06289

Description Coiled-coil domain-containing protein 47
SequenceMQEIDKNFINSVGSIVQNIRSIQSSISEVLAKLQMVDQLDWPSLLNSFRVISSQFNSMLQLLRSDRASHFKNYVFLPIRLSVEVDADLEAATENRLHAWTHAVVPDYLRTKPDPQVEQKDQQISNQVQQRLCNPESLQKQVTAFNRCLNCILDSLNASIRDSEMDGRKTSKTSDSEDTALLVAAILRGQNVKPAYSATPTSSRGSSGDSGRKVCIWMFFLSCLFELVELSVKQVSQIDDNEFAEFEEFDVELDASVDADFMANNVNERETPPVDTASIGAKRSPVNAEQKRNDGPNNNFNDDDYGIVEDESVDDFSHLLDENEFENFPDERKPGRQNAGPNKPVTQLKITDVPGHLRNNWNNFTKNHSLAVAWFDSNRPFLEENFSIVGDDGISPEVTKNVLIKESENHYIVWCSGRQGCIGMEIHLKLIKRQDLLSLILYIIRPKFDIIEIKIILNPEEMDPFVFALGTKRSAIKNAKEIMDLNLYCSEKKNVEKLGLPSSYVLHSEIGEVATGLLDSKMVSALCKYKDVVDYIHISDQFVGIKPIEMENMAKPPETAKVVMICLNIPGQLRATEEDVCTLQPLMIFIFHVLEKVRRFRLTREGKQKADKNRQYVEESFLKTTHAQRQEAAQQRREERARERKERLMAEEDPERQRKLEKQELKRELKKKQPRVKQIKIKAM
Length683
PositionHead
OrganismTrichinella pseudospiralis (Parasitic roundworm)
KingdomMetazoa
LineageEukaryota> Metazoa> Ecdysozoa> Nematoda> Enoplea> Dorylaimia> Trichinellida> Trichinellidae> Trichinella.
Aromaticity0.07
Grand average of hydropathy-0.532
Instability index45.86
Isoelectric point5.64
Molecular weight78152.92
Publications









Function






Annotated function


GO - Cellular Component
integral component of membrane	GO:0016021	IEA:UniProtKB-KW
mediator complex	GO:0016592	IEA:InterPro
rough endoplasmic reticulum membrane	GO:0030867	IEA:UniProtKB-SubCell

GO - Biological Function
transcription coregulator activity	GO:0003712	IEA:InterPro

GO - Biological Process
regulation of transcription by RNA polymerase II	GO:0006357	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP06289
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      92.11|      28|      32|     603|     634|       1
---------------------------------------------------------------------------
  603-  630 (46.53/33.70)	REGKQKADKNRQYVEESFLKTTHAQRQE
  636-  663 (45.58/23.66)	REERARERKERLMAEEDPERQRKLEKQE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     141.23|      43|     213|     332|     374|       3
---------------------------------------------------------------------------
  332-  374 (79.21/54.38)	KP.GRQN.AGPNKPVTQLKI.TDVPGHLRNNWNNFTKNHSLAVAWF
  545-  590 (62.02/40.99)	KPiEMENmAKPPETAKVVMIcLNIPGQLRATEEDVCTLQPLMIFIF
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP06289 with Med8 domain of Kingdom Metazoa


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) AQRQEAAQQRREERARERKERLMAEEDPERQRKLEKQELKREL
2) DFMANNVNERETPPVDTASIGAKRSPVNAEQKRNDGPNNNFNDDDYG
626
259
668
305










Molecular Recognition Features






MoRF SequenceStartStop




1) HLLDE
2) KERLMAE
3) LEKQELKRELKKKQPRVKQIKIKAM
317
644
659
321
650
683