<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP06287
Description |
Mediator of RNA polymerase II transcription subunit 15 (Fragment) |
Sequence | LIFGYFVVIISLFCYFFINLEHFFLCFLSLIMEDDWRSQRQREKVIQHLDNVIRSCTVPLNIPGDARQVENAIFLKANNQEEYMQFVSKIIYHASSGAAAMSQPQRHQAPVNQVPYGNMQPGTQFRRADMRPMQQPMQQQQQQQQQQQQQPQQVAGQIYSGMRAPPNAEMQPRLLRPMHQASVTMHHMHQQQAAQMGQMGMTQSAGITAAAQQQPQNVVMLLTSGNPPRQVASAPSAGQLRQPNDIQQFLQQLPPAIRQQILQLPPEEQAEQLKKFFESRRWQQQQQLHQQQQIQQQQQQQQQQQQQQQQQQIQQQIQHQQQQQQQQQLQAQQQIQHQIHHVAQNQMHPQAVIQQQQQQQQQQQQQQQQQQQQHQQQFASVRQQQQMQMLQPMMQQPGAVRFADQSTMLYSRPPATPAMMPHTPAPVQQPPSQPAPVTPMSGQAASPNVNMGTPYPSSSPAGAHMMGPSPAYAAETSPVCHPVATPCPKTSQVSPAAQNSLPPESIGAEHSPYKEKVNELLVYLEPLKRLIEQTKESTSDSSQTQKFQRMVDILEGRNDTSMDVLLKCEETLKMICQKSEIIKVKDRNINQPLLDAISAITKRERQKINLYEYFNFPLYQCSLKNTCVDTLKSISLIRKVTVFSPDCLKGMCENETAQTSNVEDSDQIGIPLNIQREIGNLESKFRVTIDPSQRPLRSSCKFISVLCELLDITLPSVPPIYIRIPTNYPQSPPKYDLEWSQYGDSPYLNSIRKSLESFSSDTGAPNTISALLTNWETCVRDASFI |
Length | 785 |
Position | Tail |
Organism | Trichinella zimbabwensis |
Kingdom | Metazoa |
Lineage | Eukaryota> Metazoa> Ecdysozoa> Nematoda> Enoplea> Dorylaimia>
Trichinellida> Trichinellidae> Trichinella.
|
Aromaticity | 0.06 |
Grand average of hydropathy | -0.709 |
Instability index | 72.22 |
Isoelectric point | 8.14 |
Molecular weight | 89567.50 |
Publications | |
Function
Annotated function |
Component of the Mediator complex, a coactivator involved in
the regulated transcription of nearly all RNA polymerase II-dependent
genes. Mediator functions as a bridge to convey information from gene-
specific regulatory proteins to the basal RNA polymerase II
transcription machinery. Mediator is recruited to promoters by direct
interactions with regulatory proteins and serves as a scaffold for the
assembly of a functional preinitiation complex with RNA polymerase II
and the general transcription factors.
ECO:0000256 RuleBase:RU364148
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GO - Cellular Component | integral component of membrane GO:0016021 IEA:UniProtKB-KW
mediator complex GO:0016592 IEA:InterPro
|
GO - Biological Function | transcription coregulator activity GO:0003712 IEA:InterPro
|
GO - Biological Process | regulation of transcription by RNA polymerase II GO:0006357 IEA:InterPro
|
Interaction
Repeat regions
Repeats |
>MDP06287
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
6| 467.68| 65| 65| 259| 323| 1
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78- 144 (92.73/19.30) N....................NQEEYMQFVSKII.....YHASS..G..AAAMSQPQRHQ.APvnqvpygNMQPGTQFRR.....ADM...RPM...QQ.PMQQ........QQQQQ
145- 216 (89.17/18.30) Q....................QQQQQPQQVAGQIysgmrAPPNA..E..MQPRLLRPMHQ.AS.......V......TMHHM.HQQQA...AQM...GQMGMTQsagitaaaQQQPQ
217- 303 (96.38/20.33) NvvmlltsgnpprqvasapsaGQLRQPNDIQQFL.....QQLPPaiR..QQILQLPPEEQ.AE.......QLKKFFESRRWQ.QQQQL...HQQ...QQIQQQQ........QQQQQ
304- 325 (49.93/ 7.29) Q....................QQQQQQQQIQQQI.....QH..............................................................Q........QQQQQ
326- 364 (63.14/11.00) Q....................QQLQAQQQIQHQI.....HH.........................................vAQNQM...HPQaviQQ.QQQQ........QQQQQ
365- 433 (76.32/14.70) Q....................QQQQQQQQHQQQF.asvrQQQQM..QmlQPMMQQPGAVRfAD.......QSTMLY.SRPPA.TPA..mmpHTP...APVQQPP........SQ...
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
3| 289.56| 76| 84| 563| 645| 2
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487- 563 (83.73/49.29) ........CPK..TSQVSPAAQN.SLPP..........ESIGAEHSPYKEKVNeLLVYLE.PLKRLieQTKESTSD.SSQTQK..FQRMVDILegrndtSMD
568- 646 (123.94/90.97) CeetLKMICQK..SEIIKVKDRN.INQPL........LDAISAITKRERQKIN.LYEYFNFPLYQC..SLKNTCVD.TLKSIS..LIRKVTVF......SPD
647- 732 (81.89/46.02) C...LKGMCENetAQTSNVEDSDqIGIPLniqreignLESKFRVTIDPSQR.P.LRSSCKFISVLC..EL....LDiTLPSVPpiYIRIPTNY....pqSP.
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 49.26| 14| 15| 455| 468| 3
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455- 468 (28.45/16.79) YPS.SSPAGAHMMGP
472- 486 (20.81/10.24) YAAeTSPVCHPVATP
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