<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP06267

Description Warthog protein 1
SequenceMVFLLLFHKIMLSMEEYNGDVINNFRQAVKACLTLLSVPVKTRHIEADEIKTTAEVATHRLIEAARRSERHFNRLYALFSAYCPEEVLKEEMNDMKQEIERKKNMILKHEEKMIAWEQILSETDTPMTGKIGRARCFHGDSIVQTEQGPMKMKEALGKSNLRVLARDADQNLIYSPITSWIHANKDRSTEFVQIVTENSKKLLLTDLHLIYENDCQGGPTRSVMAKDLTVGRCVYTMDDEQRQLRESKITSLRREIQAGFYSPITSEGNIVVDDVLASCFSTVGSEGLQKIAFAYIGWLQRALASVLPEQLYEVMMFSTAVGDIKIPSLLVGLLDISKHLGLTLVLIATVASGAAMCPGDAGERTFIQRQLSAKRSCSELTRTDCLFIHEAREKCTCTCDSLIASNVQAEAIAEPAVEMVENGGRARCFHGDDWVLTTNGRMQMKHLLQKKDAQVLTRTENGHLEYSPVMTWIHAQKETKAQFINLETESGHRLSLTPLHMIYQTDCNGKEMVLMAEKVSVGKCIFVKADNDKLVESKVVSKSKVIKTGIYSPITTSGNIVVNDVLASCFSTSANEDVQRLLFKYASFVYSLFTCPASLITDSFSHQQQDHVEIPKLLLGALNLQKYLIQ
Length630
PositionHead
OrganismTrichinella zimbabwensis
KingdomMetazoa
LineageEukaryota> Metazoa> Ecdysozoa> Nematoda> Enoplea> Dorylaimia> Trichinellida> Trichinellidae> Trichinella.
Aromaticity0.07
Grand average of hydropathy-0.150
Instability index40.82
Isoelectric point6.44
Molecular weight70753.88
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process
cell-cell signaling	GO:0007267	IEA:InterPro
intein-mediated protein splicing	GO:0016539	IEA:InterPro
multicellular organism development	GO:0007275	IEA:UniProtKB-KW
protein autoprocessing	GO:0016540	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP06267
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     107.54|      23|      86|     156|     179|       1
---------------------------------------------------------------------------
  156-  179 (33.94/30.09)	LGKSNLRVLARDAdQNLIYSPITS
  244-  266 (41.53/31.18)	LRESKITSLRREI.QAGFYSPITS
  534-  555 (32.07/22.42)	LVESKVVSKSKVI.KTGIYSPIT.
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     541.67|     167|     289|     120|     340|       2
---------------------------------------------------------------------------
  120-  340 (265.11/246.95)	LSETDTPMTGKIGRARCFHGDSIVQTEQGPMKMKEalgksnlrvlardadqnliyspitsWIHANKDRSTEFVQIVTENSKKLLLTDLHLIYENDCQgGPTRSVMAKDLTVGRCVYTMDDEQRqlreskitslrreiqagfyspitseGNIVVDDVLASCFSTVGSEGLQKIAFAYIGWLQRALASvlPEQLYEvMMFSTAVGD.IKIPSLLVGLLDISKHL
  412-  628 (276.57/233.72)	IAEPAVEMVENGGRARCFHGDDWVLTTNGRMQMKHllqkkdaqvltrtenghleyspvmtWIHAQKETKAQFINLETESGHRLSLTPLHMIYQTDCN.GKEMVLMAEKVSVGKCIFVKADNDK.lveskvvskskviktgiyspittsGNIVVNDVLASCFSTSANEDVQRLLFKYASFVYSLFTC..PASLIT.DSFSHQQQDhVEIPKLLLGALNLQKYL
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP06267 with Med28 domain of Kingdom Metazoa


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




NANANA









Molecular Recognition Features






MoRF SequenceStartStop




NANANA