<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP06259

Description Actin-interacting protein 1
SequenceMNYHLENVFAALPRTTRGMPMVLNGDPKGKKFLYCNGNSVVIRDLENPKISDVYTEHSTLTTVAKYSPNGSYIASGDKSGKIRIWDTTQKEHILKKEYQPLPGAVRDIGWSEDGQRLAVVGDGREKFGHVFLFETGTSNGTLCGQTKALNSVDFRPVKPLRIVCASEDNSTAIFEGPPFKFKTLNYNHSRFAQCVRYAPDGELFASCGADGKVFVYEGLEGSVVKEFVDPACKDKAHDGSAYALSWKSDGRQLLTASADKTCKIWDVETGSVVSTFKFGNSIEDQQLACLWQGSYLLSVSLGGCINYLDVNNPNKPRMIIKGHSKPITALAIDPSRDTIFTGDMEGKIVRWKESSGQAEEFSHQGHKSQVQSMVCTLSTLISVGMDDMLASCQEDDSNSQWAVKLGSQPQAVAVREGDPKLIAVACLNEFLLYNSNNLSARQTINYEASAIAIHPTENLLAVGSGDNKIRLYEFSDAGSMQLLKEESHLGAITSLRFSVDGKYIAVADATRRLIPYTAKTLEVVRAVKNDWTFHLAKINCLAWCPDSRHIATGSLDTNIIVWDMENAGEHPLIIKGAHKMSQITNIEWWNNNTLVSTGQDANVKLWKISF
Length610
PositionTail
OrganismTrichinella zimbabwensis
KingdomMetazoa
LineageEukaryota> Metazoa> Ecdysozoa> Nematoda> Enoplea> Dorylaimia> Trichinellida> Trichinellidae> Trichinella.
Aromaticity0.09
Grand average of hydropathy-0.286
Instability index27.48
Isoelectric point6.33
Molecular weight67263.43
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP06259
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      86.37|      29|      41|     411|     451|       1
---------------------------------------------------------------------------
  411-  448 (39.64/40.40)	AVAVREGDpkliavaclNEFLLYNSNNLSARQTINYEA
  459-  487 (46.73/29.45)	LLAVGSGD.........NKIRLYEFSDAGSMQLLKEES
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             6|     238.47|      36|      43|     527|     562|       2
---------------------------------------------------------------------------
   68-   85 (18.42/ 6.48)	..................PNGSY.IASGDKSGKIRIW
  244-  265 (23.83/10.63)	..............LSWKSDGRQ.LLTASADKTCKIW
  276-  302 (27.83/13.69)	FKFGNSIEDQQLACL.WQGSYLLsVSLG.........
  320-  351 (51.28/31.67)	IK.G...HSKPITALAIDPSRDT.IFTGDMEGKIVRW
  527-  562 (63.19/40.80)	VKNDWTFHLAKINCLAWCPDSRH.IATGSLDTNIIVW
  574-  606 (53.93/33.70)	IK.G.AHKMSQITNIEWWNNNTL.VSTGQ.DANVKLW
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     137.31|      42|     128|      18|      66|       3
---------------------------------------------------------------------------
   18-   59 (77.07/50.35)	GMPMVLNGDPK...GKKFLYCNG.............NSVVIRDLENPKISDVYTEHST
  114-  171 (60.23/27.76)	GQRLAVVGDGRekfGHVFLFETGtsngtlcgqtkalNSVDFRPVKPLRIVCASEDNST
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP06259 with Med16 domain of Kingdom Metazoa
Unable to open file!