<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP06235

Description Dynactin subunit 4
SequenceMLRNGAKSDVVRKIYPMNQNQSSTVSVPVELAEVTVMQGLRAVRDLRQSMSRLFDTLKDIRETPVTDEKAEESDLWLNFKSTLQKIMDNFEILEKCAVSLSKQPVQFLHPNLNQQIRSYCTDEAQIYPDIVYVYEWVKRIRESAQWLYNFVSQMSRRSQSRFLSHLFPMIQRQFPGVHIFSLPLGRSVFMLLVSFNVQTSAVDALRGPCTIFKVAILLRGLQIEWANVKGPEELNQNCLEKGDIYKPSQYIVFQKMTENVKCMIAQFNSSYSNLQLPQTLIRQFFCYPSIIKILKKNFTQLAQNPFKNVTKKQTERNLKRITKKDCSWINRKFSHTAVMSTLYDIQRTLYFCSCQRWLPLCELYFCKHCICFRCYNCAKPEVDSIFCAQCMENRSIAEARATKNRCEICCDCPVCGAKLEIRVKCGNTNSGDLVKSNENESEKNNNKQFRLQCFTCMWSSLEAGIPDDKSIIEKCNQPEPPYAKELKSIMERFRQMARMEKLQIERKKFMPKRLSLFQFHPDKFPMHDFLTKQQMSTSLESFSPLYESSEDVEPLDSSVFVNSFFISDGNLWLLTSMEQRLRQPLLQPRYVKDLLPVKKQLLVKQSLRCPQCDHNISKGEYVPESIKFKINYSAPLIVPELRLAEQVDFKLNEETKVIITITNGSLMDVALFLLPDASENENIKVSLPIGEISVPKFVYSTPFSEESQESPKDETEGVVKRCGNKVFIEIMVTVQKNITPVTLSLILKHHHVGNVRLTEGEAEWLEHRVRMKLSDDVKLS
Length780
PositionTail
OrganismTrichinella britovi (Parasitic roundworm)
KingdomMetazoa
LineageEukaryota> Metazoa> Ecdysozoa> Nematoda> Enoplea> Dorylaimia> Trichinellida> Trichinellidae> Trichinella.
Aromaticity0.09
Grand average of hydropathy-0.331
Instability index50.75
Isoelectric point8.76
Molecular weight90405.86
Publications









Function






Annotated function


GO - Cellular Component
dynactin complex	GO:0005869	IEA:InterPro

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP06235
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      90.30|      29|      85|     451|     495|       1
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   81-  118 (42.15/13.62)	STLQK.IMDNFEILEKCavslsKQPvqflHPNLNQQIRS
  459-  488 (48.15/31.65)	SSLEAgIPDDKSIIEKC.....NQP....EPPYAKELKS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     204.56|      57|     278|     221|     285|       2
---------------------------------------------------------------------------
  175-  212 (39.23/19.00)	..........................PGVHIFSLPLGRSVFMLLVSFNvqtSAVDALRGPCTI........F
  221-  285 (87.60/76.55)	LQiewanvKGPEELNQNCLEkgDIYKPSQYIVFQKMTENVKCMIAQFN...SSYSNLQLPQTL..IRQ..FF
  294-  351 (77.73/49.55)	LK......KNFTQLAQNPFK..NVTKKQTERNLKRITKK.DC..SWIN...RKFSHTAVMSTLydIQRtlYF
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      81.93|      23|     425|     146|     168|       5
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  146-  168 (43.62/26.54)	WLYNFVSQMSRRS..QSRFLSHLFP
  572-  596 (38.31/22.45)	WLLTSMEQRLRQPllQPRYVKDLLP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      49.45|      15|      18|     622|     638|       6
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  624-  638 (25.07/19.61)	ESIKFKINYSAPLIV
  645-  659 (24.38/10.86)	EQVDFKLNEETKVII
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      62.43|      15|      18|     359|     373|       7
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  359-  373 (33.17/18.78)	PLCELYFCKHCICFR
  380-  394 (29.25/15.73)	PEVDSIFCAQCMENR
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP06235 with Med27 domain of Kingdom Metazoa
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