<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP06234

Description Dynactin subunit 4
SequenceMNKDQKLISLCNYLVVRKIYPMNQNQSSTVSVPVELAEVTVMQGLRAVRDLRQSMSRLFDTLKDIRETPVTDEKAEESDLWLNFKSTLQKIMDNFEILEKCAVSLSKQPVQFLHPNLNQQIRSYCTDEAQIYPDIVYVYEWVKRIRESAQWLYNFVSQMSRRSQSRCLRKVFLPVFLQVNLTFLSHLFPMIQRQFPGVHIFSLPLGRSVFMLLVSFNVQTSAVDALRGPCTIFKVAILLRGLQIEWANVKGPEELNQNCLEKGDIYKPSQYIVFQKMTENVKCMIAQFNSSYSNLQLPQTLIRQFFCYPSIIKILKKNFTQLAQNPFKNVTKKQTERNLKRITKKDCSWINRKFSHTAVMSTLYDIQRTLYFCSCQRWLPLCELYFCKHCICFRCYNCAKPEVDSIFCAQCMENRSIAEARATKNRFALFICVNLFDHQYFRCEICCDCPVCGAKLEIRVKCGNTNSGDLKSNENESEKNNNKQFRLQCFTCMWSSLEAGIPDDKSIIEKCNQPEPPYAKELKSIMERFRQMARMEKLQIERKKFMPKRLSLFQFHPDKFPMHDFLTKQQMSTSLESFSPLYESSEDVEPLDSSVFVNSFFISDVTSMEQRLRQPLLQPRYVKDLLPVKKQLLVKQSLRCPQCDHNISKGEYVPESIKFKINYSAPLIVPELRLAEQVDFKLNEETKVIITITNGSLMDVALFLLPDASENENIKVSLPIGEISVPKFVYSTPFSEESQESPKDETEGVVKRCGNKVFIEIMVTVQKNITPVTLSLILKHHHVGNVRLTEGEAEWLEHRVRMKLSDDVKLS
Length811
PositionTail
OrganismTrichinella britovi (Parasitic roundworm)
KingdomMetazoa
LineageEukaryota> Metazoa> Ecdysozoa> Nematoda> Enoplea> Dorylaimia> Trichinellida> Trichinellidae> Trichinella.
Aromaticity0.09
Grand average of hydropathy-0.282
Instability index50.04
Isoelectric point8.79
Molecular weight94288.57
Publications









Function






Annotated function


GO - Cellular Component
dynactin complex	GO:0005869	IEA:InterPro

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP06234
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      93.80|      27|      53|     379|     408|       1
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  379-  408 (49.50/38.89)	LPLC.....ELYF.CKhcICFRCYNC.AKPEVdSIFC
  429-  462 (44.30/23.56)	LFICvnlfdHQYFrCE..ICCDCPVCgAKLEI.RVKC
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     322.74|     114|     514|      52|     228|       2
---------------------------------------------------------------------------
   52-  182 (173.08/180.03)	RQSMSRLF.DTLK.DIRET.P.VTDE..KAEESDLWLNFKSTLQKIMDNFEILEkcaVSLskqpvqFLHPNL..NQQIR.SYCTDEAQIyPDIVYVYEWVKRIRESAQwlynfvsQMSRRSQSRCLRKVFLPVFLQV..NLT
  646-  770 (149.67/107.85)	NISKGEYVpESIKfKINYSaPlIVPElrLAEQVDFKLNEETKVIITITNGSLMD...VAL......FLLPDAseNENIKvSLPIGEISV.PKFVYSTPFSEESQESPK.......DETEGVVKRCGNKVFIEIMVTVqkNIT
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     143.20|      45|     383|     183|     229|       8
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  183-  229 (77.93/62.69)	FLSHLFPM...IQRQFPGVHIFSL...........PLGRSVFmlLVSFNVQ..TSAVDALRGP
  555-  615 (65.27/45.29)	FHPDKFPMhdfLTKQQMSTSLESFsplyessedvePLDSSVF..VNSFFISdvTSMEQRLRQP
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP06234 with Med27 domain of Kingdom Metazoa
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