<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP06231

Description Dynactin subunit 4
SequenceMNKDQKLISLCNYLVVRKIYPMNQNQSSTVSVPVELAEVTVMQGLRAVRDLRQSMSRLFDTLKDIRETPVTDEKAEESDLWLNFKSTLQKIMDNFEILEKCAVSLSKQPVQFLHPNLNQQIRSYCTDEAQIYPDIVYVYEWVKRIRESAQWLYNFVSQMSRRSQSRCLRKVFLPVFLQVNLTFLSHLFPMIQRQFPGVHIFSLPLGRSVFMLLVSFNVQTSAVDALRGPCTIFKVAILLRGLQIEWANVKGPEELNQNCLEKGDIYKPSQYIVFQKMTENVKCMIAQFNSSYSNLQLPQTLIRQFFCYPSIIKILKKNFTQLAQNPFKNVTKKQTERNLKRITKKDCSWINRKFSHTAVMSTLYDIQRTLYFCSCQRWLPLCELYFCKHCICFRCYNCAKPEVDSIFCAQCMENRSIAEARATKNRCEICCDCPVCGAKLEIRVKCGNTNSGDLKSNENESEKNNNKQFRLQCFTCMWSSLEAGIPDDKSIIEKCNQPEPPYAKELKSIMERFRQMARMEKLQIERKKFMPKRLSLFQFHPDKFPMHDFLTKQQMSTSLESFSPLYESSEDVEPLDSSVFVNSFFISDVTSMEQRLRQPLLQPRYVKDLLPVKKQLLVKQSLRCPQCDHNISKGEYVPESIKFKINYSAPLIVPELRLAEQVDFKLNEETKVIITITNGSLMDVALFLLPDASENENIKVSLPIGEISVPKFVYSTPFSEESQESPKDETEGVVKRCGNKVFIEIMVTVQKNITPVTLSLILKHHHVGNVRLTEGEAEWLEHRVRMKLSDDVKLS
Length795
PositionTail
OrganismTrichinella britovi (Parasitic roundworm)
KingdomMetazoa
LineageEukaryota> Metazoa> Ecdysozoa> Nematoda> Enoplea> Dorylaimia> Trichinellida> Trichinellidae> Trichinella.
Aromaticity0.09
Grand average of hydropathy-0.303
Instability index50.88
Isoelectric point8.80
Molecular weight92273.23
Publications









Function






Annotated function


GO - Cellular Component
dynactin complex	GO:0005869	IEA:InterPro

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP06231
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      95.26|      31|      63|     274|     307|       1
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  274-  307 (47.92/44.48)	FQKMTENvKCmiAQFNSSYSNLQLPQTL..IRQ..FFC
  339-  373 (47.34/31.80)	LKRITKK.DC..SWINRKFSHTAVMSTLydIQRtlYFC
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     322.74|     114|     498|      52|     228|       2
---------------------------------------------------------------------------
   52-  182 (173.08/175.93)	RQSMSRLF.DTLK.DIRET.P.VTDE..KAEESDLWLNFKSTLQKIMDNFEILEkcaVSLskqpvqFLHPNL..NQQIR.SYCTDEAQIyPDIVYVYEWVKRIRESAQwlynfvsQMSRRSQSRCLRKVFLPVFLQV..NLT
  630-  754 (149.67/105.39)	NISKGEYVpESIKfKINYSaPlIVPElrLAEQVDFKLNEETKVIITITNGSLMD...VAL......FLLPDAseNENIKvSLPIGEISV.PKFVYSTPFSEESQESPK.......DETEGVVKRCGNKVFIEIMVTVqkNIT
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      70.33|      18|      20|     375|     394|       3
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  375-  394 (34.75/22.64)	CQRwlPLCELYFCKHCICFR
  398-  415 (35.59/16.67)	CAK..PEVDSIFCAQCMENR
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     143.20|      45|     367|     183|     229|       7
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  183-  229 (77.93/58.92)	FLSHLFPM...IQRQFPGVHIFSL...........PLGRSVFmlLVSFNVQ..TSAVDALRGP
  539-  599 (65.27/42.61)	FHPDKFPMhdfLTKQQMSTSLESFsplyessedvePLDSSVF..VNSFFISdvTSMEQRLRQP
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP06231 with Med27 domain of Kingdom Metazoa
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