<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP06212

Description Actin-interacting protein 1
SequenceMSSHWVQSLGDSILFAAALGFLVRNIPFLIRVEFLPFGEENELSFRTTRGMPMVLNGDPKGNNFLYCNGNSVVIRDLENPKISDVYTEHSTLTTVAKYSPNGAYIASGDKSGKIRIWDTTQKEHILKKEYQPLPGAVRDIGWSEDGQRLAVVGDGREKFGHVFLFETGTSNGTLCGQTKALNSVDFRPVKPLRIVCASEDNSTAIFEGPPFKFKTLNYNHSRFAQCVRYAPDGQLFASCGADGKVFVYEGLEGSVVKEFVDPACKGKAHDGSAYALSWKSDGSQLLTASADKTCKIWDVETGNVVNTFKFGNSIDDQQLACLWQGDYLLSVSLGGCINYLDVNNPNKPRMIIKGHNKPITALAIDPSRDTVFTGDMEGKIVRWKESSGQAEEFTHQGHKSQVQSMVCTLSTLISVGMDDMLACSQQDDSNSHWSVKLGSQPQAVAVREGDPKLIAVACLNEVLLYNGSSLSARQTINYEASAIAIHPTENLLAVGSADNKIRLYEFSDAGSMQMLKEETHLGAITSLRFSIDGKYIAVADATRRLILYTAKTLERAVKNDWTFHLAKINCLAWCPDSRHIATGSLDTNIIVWDMENAGEHPLIIRGAHKMSQITNIEWWNNNTLVSTGQDANVKLWKISF
Length640
PositionTail
OrganismTrichinella britovi (Parasitic roundworm)
KingdomMetazoa
LineageEukaryota> Metazoa> Ecdysozoa> Nematoda> Enoplea> Dorylaimia> Trichinellida> Trichinellidae> Trichinella.
Aromaticity0.09
Grand average of hydropathy-0.233
Instability index30.45
Isoelectric point6.08
Molecular weight70564.13
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP06212
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             5|     642.85|     128|     133|      67|     198|       1
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   67-  125 (63.43/37.31)	.......................................................................................CN.GNSVVI.RDLENP..KISDVYTEHSTLTTVAKYSPNGAYIASGDKSGKIRIWD..TTQK.EHI
  126-  255 (189.19/141.43)	LKKEYQP.LPGAVRD.....IGWSEDGQRLAVVGDGREKFGHVFLFETGTSNGTLcgqtKALNSVDFRPVKPL....RIVCAS.....E.DNSTAI...FEGPpfKFKTLNYNHSRFAQCVRYAPDGQLFASCGADGKVFVYE..GLEG.S.V
  256-  393 (165.02/113.03)	VKEFVDPaCKGKAHDgsayaLSWKSDGSQLLTASA..DKTCKIWDVETGNVVNTF....KFGNSIDDQQLACLwqgdYLLSVS......lGGCINY.LDVNNP.nKPRMIIKGHNKPITALAIDPSRDTVFTGDMEGKIVRWKesSGQA.EEF
  435-  512 (100.92/65.99)	VKLGSQP.QAVAVRE......G...DPKLIAV...............................................ACLNevllYN.GSSLSA.RQTINY..EAS..........AIAIH.PTENLLAVGSADNKIRLYE..FSDA.GSM
  513-  601 (124.28/83.14)	QMLKEET.HLGAITS.....LRFSIDGKYIAVADATR....RLILYT.................................................aKTLERA..VKND.WTFHLAKINCLAWCPDSRHIATGSLDTNIIVWD..MENAgEHP
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP06212 with Med16 domain of Kingdom Metazoa
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