<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP06201

Description F-box-like/WD repeat-containing protein TBL1X
SequenceMATGEGENCSALPSDELNIGFDEDENCSTPPSFEHNRGFDEDANCSTPPADEHNSKFDEDEDCSTPRSAEHNIGFDEGENCSTPPSAEHNSEFDEDEDCSTPSLSEIDSEFDVDSDCSTPTSVLSPFPEDQLNFLVWRFFKDHGYHVTAEMFAEDNAVEENCGVEDLSICKGSLRKLLEMLHFKSIVDGDIPQDGNLYDLVPGECFLSESSSSTTETASVDNSSEDSSFTAVELKCIMCTNYNSSICSLDWSFEEDLLLTGSADKVVRLWNMKDEKGETKNSYREITCFKDENNGVNLPVSNGVVLVSWSPQGDLIASADSRGKIRICKKDGNFTINCFNVPEDIAILKWNVTERLLLTATVDGVISLWSARTGDCVGCFTPFEDDVTDADWKDGATFTACSKDGMLFHCCITSTDASGPFNGHENSINVIKWDPTGNMAATGSSDMMVKVWRFGNEECVGCLKGHTAEVNTLGWHSTDQAILASGSEDGVVCVWDVINAEMLHMLNGHMTPLRMVAFRPETDMLISCSSDSVICLWNGRNGKRLRKIGNGDRATVNVMMWNRSGQMIAVGRRDGTASMETEETNVPEPVVVPSRRRIPTLRMESPIRAEDLHYLVWRFLKDTGQHRIAEQFELESKVLCSTLDSELPYVCFGSMEILMDALHKKCVQDGDIPEMGSLLELVPATLYHPSEVALSPDTDSSRSDSPFDHMLQITDIRPINTCKWGIKVLKILSKVGHNSDVSNCAWNPKEDFLLTGSVDKIVHLWNLENDITNVDENCVLASLDLTTLQVTDCRHLLPDLTFVAWSPDGDTAASVGLAGQFCIWKRDGSFLFTCTHPTHSILLLKWSTDGKHLLTASSNGIIVIWTASTGEIYADYGPFSTSVTDADWKDDSTFSVCFDNGTLFHCSPTDPFVMSTFEGHQMRVNMIRWDPAGKMMASCSDDRLVRIWRLNSQTYDFSLCGHTAEVDVLCWHDTDRAILASGSSDQSVRVWNVNRGEILYVFSFHTSPICTLEFRPGSDILASSGLDNRIMLWNVKVGGMLNEIENDDQKRIYELAWNRNGEKLAIAKADGLIEVFYVESD
Length1081
PositionTail
OrganismTrichinella britovi (Parasitic roundworm)
KingdomMetazoa
LineageEukaryota> Metazoa> Ecdysozoa> Nematoda> Enoplea> Dorylaimia> Trichinellida> Trichinellidae> Trichinella.
Aromaticity0.08
Grand average of hydropathy-0.289
Instability index40.68
Isoelectric point4.51
Molecular weight119982.82
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP06201
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
            14|     503.69|      37|      39|     344|     380|       1
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  203-  286 (20.77/ 6.66)	GeCFlsessssttetasvdnssedssftavelkcimctnynsS...............ICSLD...............WSFEED.LLLTG.SADKVVRLWNMKdeK......GE..TknsyreI
  287-  336 (30.11/13.33)	T.CF.........................kdenngvnlpvsnG...............VVLVS...............WSPQGD.LIASA.DSRGKIRI.CKK..D......G.nfT......I
  337-  377 (47.79/25.94)	N.CF..................................nvpeD...............IAILK...............WNVTER.LLLTA.TVDGVISLWSAR..T......GD..C......V
  378-  418 (29.59/12.95)	G.CF.................................tpfedD...............VTDAD...............WK..DG.ATFTAcSKDGMLFHCCIT..S......TD..A......S
  419-  460 (45.18/24.08)	G.PF..................................ngheN..............sINVIK...............WDPTGN.MAATG.SSDMMVKVWRFG..N......EE..C......V
  461-  503 (43.17/22.65)	G.CL.................................kghtaE...............VNTLG...............WHSTDQaILASG.SEDGVVCVWDVI..N......AE..M......L
  504-  545 (40.14/20.48)	H.ML....................................ngH...............MTPLR............mvaFRPETD.MLISC.SSDSVICLWNGR..N......GK..R......L
  740-  779 (37.73/18.76)	..........................................D...............VSNCA...............WNPKED.FLLTG.SVDKIVHLWNLE..NditnvdEN..C......V
  781-  831 (34.23/16.27)	A.SL......................................D...............LTTLQvtdcrhllpdltfvaWSPDGD.TAASV.GLAGQFCIW.KR..D......GS..F......L
  833-  873 (40.72/20.90)	T.CT..................................hpthS...............ILLLK...............WSTDGK.HLLTA.SSNGIIVIWTAS..T......GE..I......Y
  874-  904 (24.59/ 9.39)	A.DY.................................gpfstS...............VTDAD...............W..KD..........DSTFSV.CFD..N......GT..L......F
  905-  955 (39.97/20.36)	H.CS......................................PtdpfvmstfeghqmrVNMIR...............WDPAGK.MMASC.SDDRLVRIWRL...N......SQ..T......Y
  956-  999 (31.00/13.96)	..........................................D......fslcghtaeVDVLC...............WHDTDRaILASG.SSDQSVRVWNVN..R......GE..I......L
 1000- 1041 (38.72/19.48)	Y.VF.................................sfhtsP...............ICTLE...............FRPGSD.ILASS.GLDNRIMLWNVK..V......GG..M......L
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             7|     225.11|      16|      16|      20|      35|       2
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    5-   17 (19.34/ 6.01)	...EGENCSALPSDEL
   20-   35 (39.92/19.82)	GFDEDENCSTPPSFEH
   38-   53 (37.13/17.95)	GFDEDANCSTPPADEH
   56-   71 (36.06/17.23)	KFDEDEDCSTPRSAEH
   74-   89 (39.14/19.30)	GFDEGENCSTPPSAEH
   92-  107 (31.94/14.47)	EFDEDEDCSTPSLSEI
  110-  122 (21.58/ 7.52)	EFDVDSDCSTPTS...
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      54.07|      18|      30|     150|     167|       3
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  150-  167 (32.64/19.23)	EM..FAE..DNAVEENCGVEDL
  179-  200 (21.43/10.11)	EMlhFKSivDGDIPQDGNLYDL
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      91.85|      22|     478|     125|     146|       4
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  125-  146 (47.36/36.83)	SPFPEDQLNFLVWRFFKDHGYH
  605-  626 (44.50/34.10)	SPIRAEDLHYLVWRFLKDTGQH
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     104.58|      29|     493|     547|     575|       5
---------------------------------------------------------------------------
  547-  575 (53.65/38.27)	KIGNGDRATVNVMMWNRSGQMIAVGRRDG
 1043- 1071 (50.93/35.94)	EIENDDQKRIYELAWNRNGEKLAIAKADG
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP06201 with Med16 domain of Kingdom Metazoa


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) MATGEGENCSALPSDELNIGFDEDENCSTPPSFEHNRGFDEDANCSTPPADEHNSKFDEDEDCSTPRSAEHNIGFDEGENCSTPPSAEHNSEFDEDEDCSTPSLS
1
105










Molecular Recognition Features






MoRF SequenceStartStop




1) CSALPSDELNIGFDEDENC
2) PPSFE
9
30
27
34