<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP06189

Description Mediator of RNA polymerase II transcription subunit 24 (Fragment)
SequenceMAESSMNAVEQLLFDAWSECWPDIIFMKQLRQRIEITNQNIEQLSSLLLYYVTLSEMPNRLMLKYIRFCLDTQVVPCVAFLNVVNSYRCYEKVGCINEILVLVIYCLDKLNCDFCDADVCVRTSILVMNTVLWILAYVEYLLTSNNFPPLAHLWSLVFTLKENKFVEFCNYFVCWELSEFHDQIKVSIVNIKSEFCTLKSNDEACVFRNSYDNLFSANPNEILAKSVRASDSRIPSVVISLSGIFAHVQSMKGIAAMVEALKVAKDIQGESWLNILYDLIMGGILQQHDDSTTLPFSVSSSYLYLRIPRLLSQLVAEGIPKETLIGSLRRIATSEAVLNVSDTKARCNTLQAFLNVLSELGILEESEKDTLMAIRDEMRKELYVQEGQPTINLVLRAEFTLQSIVKAFDAHQALERWPQMLNTMMSGKSLLYICAAAISIDQLNLLAERLIKITETYKEVVPVGEDAQKSLPPSHDLFDMSFLLLHRLSQYYSTTTCLRPGDPFFKTWYFSSAIDLVRNMFDPEDLPQLLKNVPLDLELATDVLSRLKVGQPGWLNIRTWYCIIDLIPSIVQVVLNEVLLDTISIEELKHIFSGLLFLNIHGVSCMCSPLLCFAQYVALQKTDEATKLASSLFSFFESITPSDAERNRQTDRQTFMVNSAKKLFSTYRELPVTLMHVLRMNRAPAQLNHSPDDHFPVIGKPENIRSFFAASERAGYLTAALIARIIVLVESEQYDSWLSAFIEALQKVNTMQGMEKWCNLNLACCFIRPKECTLALIPLLSNYVLHDDRDLFCVAPRGNILAFFLVKLYLIALRYTTPTAVDKAETTEFSVDEYSVQNNTNSSSTADRSAVITSLRELFSCKFEVVRSGELCPTVAFVSNFLYCLSEYSTPEAELIKNEIPMHLIFSLLRADPDILSMRTVLRLFDLKVDMVLFANIAITVTVKVETEFTHYSKFCIRERRNDLENSYKILYNTNLDKFCYVNDFRPTKQIYNNLMLNYAVGNLVKVLCAIQILKRFII
Length1019
PositionTail
OrganismTrichinella patagoniensis
KingdomMetazoa
LineageEukaryota> Metazoa> Ecdysozoa> Nematoda> Enoplea> Dorylaimia> Trichinellida> Trichinellidae> Trichinella.
Aromaticity0.10
Grand average of hydropathy0.159
Instability index43.39
Isoelectric point5.42
Molecular weight116317.85
Publications









Function






Annotated function


GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP06189
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      34.29|       9|      49|     507|     517|       1
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  507-  517 (13.91/14.31)	TWYfsSAIDLV
  559-  567 (20.38/12.10)	TWY..CIIDLI
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      47.14|      14|     152|     523|     558|       2
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  523-  536 (24.75/15.98)	PEDLPQLLKNVPLD
  568-  581 (22.40/15.36)	PSIVQVVLNEVLLD
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     239.27|      76|     152|     192|     275|       3
---------------------------------------------------------------------------
  198-  275 (123.89/108.04)	LKSNDEACVFRNSYDNLFS..ANPNEIlaKSVRASDSRIPSVVISL.SGIFAHVQSMK...GIAAMVEALKVAKDIQG.ESWLNI
  678-  760 (115.38/79.90)	LRMNRAPAQLNHSPDDHFPviGKPENI..RSFFAASERAGYLTAALiARIIVLVESEQydsWLSAFIEALQKVNTMQGmEKWCNL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      44.86|      17|      51|     100|     124|       4
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   87-  104 (22.76/10.14)	YrCYEKVGC........INEILVLVI
  105-  129 (22.09/28.71)	Y.CLDKLNCdfcdadvcVRTSILVMN
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      53.52|      19|      49|     304|     325|       7
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  304-  325 (26.67/26.90)	YLRIprlLSQL.VAEGIPKETLI
  353-  372 (26.85/16.79)	FLNV...LSELgILEESEKDTLM
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      43.30|      13|      19|     132|     147|       9
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  132-  147 (19.17/23.45)	LWILAYVeylLTSNNF
  153-  165 (24.13/17.05)	LWSLVFT...LKENKF
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     123.82|      41|     213|     761|     806|      12
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  761-  806 (63.51/53.80)	NL.ACCFI...RPKECTLAliPLLSNYVLHDDRDLFCVAprgNILAFFLV
  975- 1019 (60.30/37.12)	NLdKFCYVndfRPTKQIYN..NLMLNYAVGNLVKVLCAI...QILKRFII
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP06189 with Med24 domain of Kingdom Metazoa
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