<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP06183

Description Mediator of RNA polymerase II transcription subunit 23 (Fragment)
SequenceMSVSLSDFEAKVKNLFKEHAKSGNAHFFFRPYLITSSEECEKEIVISTANELMEIFTSLPQNLQESAFSIVISHRVLSNSANRIVDFFVRNVTQRQMLSIKCICEKLLTCAELNINSCGWNDTFAFFVENISLLDYKGVRDTLKRLLDIPIPVHLQVDQRKSVEAVEKLIKTICDRKNNLLPAYFVITEIIKNLPEQRCFSHWRMADCFTEIIESFRPLAQLNSVCGRTFMTPIPGHVGFYFNAFWKLEALSLRFPLKGLLPYSQDLLNPQMRLLTHVFMHYTYRDAIAVLLGTAKPEKSRIPYFEEVITEIILELMFTAECDHSQLNPQAWRIISTQIIYLTLQQSICFTRLVKILHTKLTHYPYRYARNQLMWCLFNFLSGGMQKYSVEEFAVILDLYRLLYTGRDIFTVSGSDSSCVLMLAPTCIWIHILKKSPSMEVELPPTVNTQRKFLQEALKNKTQFNTDNYMVAVLCNAYSSTSEIFQQDLLPILLENLDNTRGHNSTQASGNFASNATSSMPYPNGAVSEVKLRPLKLEFLDSVSVHVRMNIANSLIGTFGRFMQGKSAWPSPALVETYCRMLTYPDLEILGLKQFTSHIVLTAARHQCCEMMYICCEILNYRLFNIPSTYRVHAIVTLQQTLAFAKFQTNASLYWMLERTLLLQFQWYPHYEIFQAPFARLLNSFVAVAADGTKQSIAENEELMRIIILTLARSTVISSNSDSCFIEGVYRELLNKLPSYSWPQSTLSVFPQVFCSHYTQQQQQQQQQQQQQQQQQQQQPQQPQQQQQQQQQPQPQQSNVVVGSSQQPQQQQQSRFLLKQQVDEEYIKHRTFGSELSLIDYFTNTSTSTVYLCLLWRLVYDTGELPAVSMKILEVLGPRKVLVHLKSLADFLVYETNSADVNRCVDVLNRLIFKYAVVPLERFMLTMLLRDYEGNDAFYALLIVMLLVQRSEELRSAVADCVAMLPSDYWHCQDWNDKYQAYQIKHAERTWSQVYVELSRASLTPNDCPLPVYFGTRCLQMLPVVDLLLQKLVESPAACLKFLDSTLSILGPLYRFHPYPVSFLYSTFRFYEKRLVESPAIKQKLALAVHGACVPSRDDHWLLSAEFVGWVGQATDRGPWVPDLNYYGALVRRLIDTFSEPRQQWSRKTDLRFVEFNNFQTHALYSICIELMSLPVGVVDVGNALVTLVTHWHSLVDKNTVMYWVNAIGLIFSALPISYMEPFYQTILTTLCSDHMNSINTDVSNKLDFEKRSKLMEDCYPARILALCHAVWLHSASGYLQLLPQALRSTWIPHVRSEGQFLYVCHLVAPFLQRFYQERTKFTMDITTDLYQMLYNVDCEVGNWKYEDLICDFFYHVKYMYVGDSVRQDTDRIIPMLRPSLQQKLRYISFAQGEQSAGTPFSEMINPIKLLGIQMVVWLQRLPIFGETAQHFWLAVTKLGDPVMTFSLYFPALFPFFGTAALDMVIVGAFSEISNCILKWILLDDRPYWWVHTAGVSGQLSHPLKQFQWTCETGPGSPSGHAMVSASVWFNLLYNLQSDLVLGDLCGICWLLYVVFLIAVSISRTYISAHFPDQVILGIVVGICMALVTRSLVGHRRRRWSNLIAFMIALLLIALSVHEAHRFFGVDTHRSIELAAKYCHRAEWIHQSTTPLASFFRDVGVLISVAILLANKSMFTNNNKIASKFFSTKFAQALLGVGLNQLVALIPIGRLPTALFYAVLLPVLFTNNSNKLQ
Length1733
PositionTail
OrganismTrichinella patagoniensis
KingdomMetazoa
LineageEukaryota> Metazoa> Ecdysozoa> Nematoda> Enoplea> Dorylaimia> Trichinellida> Trichinellidae> Trichinella.
Aromaticity0.12
Grand average of hydropathy0.055
Instability index47.13
Isoelectric point7.74
Molecular weight199014.34
Publications









Function






Annotated function


GO - Cellular Component
integral component of membrane	GO:0016021	IEA:UniProtKB-KW
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP06183
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     104.08|      22|      40|     751|     779|       1
---------------------------------------------------------------------------
  751-  779 (38.88/35.69)	PQvfcshytQQQQQQQQQQQQQQQQQQQQ
  780-  799 (37.32/18.92)	PQ.......QPQQQQQQQQQPQPQQSN..
  803-  821 (27.88/10.31)	..........GSSQQPQQQQQSRFLLKQQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     166.08|      37|      40|    1001|    1037|       2
---------------------------------------------------------------------------
  932-  973 (30.33/13.52)	.......Y.EGNDAFYAL.LIVMLLVQRseeLRSAVAdcVAMLPSDywhCQ
  979- 1009 (49.65/26.82)	Y....QAY.......QIK.HAERTWSQV...YVELSR..ASLTPND...CP
 1010- 1046 (61.15/34.74)	L....PVY.FGTRCLQML.PVVDLLLQK...LVESPA..ACLKFLD...ST
 1047- 1080 (24.96/ 9.82)	LsilgPLYrFHPYPVSFLySTFRFYEKR...LVESPA..............
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     187.39|      53|      81|    1563|    1615|       3
---------------------------------------------------------------------------
 1188- 1226 (43.97/24.41)	...........LVThwHSLVDKNTVMyWVN......AIGLIFSAL................................PISYMEPFY..QT
 1541- 1575 (39.83/21.37)	VLGDLCGICWLL.......................................................yvvfliavsiSRTYISAHFPDQV
 1576- 1658 (63.92/39.06)	ILGIVVGICMALVT..RSLVGHRRRR.WSNLIA..FMIALLLIALsvheahrffgvdthrsielaakychraewihqSTTPLASFFRD..
 1659- 1699 (39.67/21.25)	.VGVLISVAILLAN..KSMFTNNNKI.ASKFFStkFAQALLGVGL.............................................
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     104.88|      25|      79|    1430|    1454|       4
---------------------------------------------------------------------------
 1430- 1454 (44.16/24.66)	QHFWLAVTKLGDP....VMTFSL.................YFPALF
 1468- 1505 (20.81/ 7.68)	GAF....SEISNC....ILKWILlddrpywwvhtagvsgqLSHPLK
 1506- 1534 (39.91/21.56)	QFQWTCETGPGSPsghaMVSASV.................WFNLLY
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      57.72|      15|      80|     273|     287|       5
---------------------------------------------------------------------------
  273-  287 (28.85/20.36)	RLLTHVFMHYTYRDA
  355-  369 (28.86/20.37)	KILHTKLTHYPYRYA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     157.68|      38|      84|     112|     154|       6
---------------------------------------------------------------------------
   79-  110 (45.79/23.24)	NSA....NRIVDFFVRNVTQRQMLSIKCICEKLLTC.....
  116-  154 (63.00/51.33)	NSCgW..NDTFAFFVENISLLDYKGVRDTLKRLLDIPIPVH
  203-  237 (48.89/28.45)	....WrmADCFTEIIE..SFRPLAQLNSVCGRTFMTPIPGH
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     101.35|      34|      40|     456|     495|       7
---------------------------------------------------------------------------
  458-  495 (54.94/48.97)	LKNKTQFN....TDNYMvavlCNAYSS....TSEIFQQDLLPILLE
  497-  538 (46.41/26.02)	LDNTRGHNstqaSGNFA....SNATSSmpypNGAVSEVKLRPLKLE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      97.06|      27|      34|    1268|    1301|       8
---------------------------------------------------------------------------
 1101- 1128 (49.53/18.92)	WLLSA.EFVGWVGQATdRGPWVPDLNYYG
 1272- 1299 (47.53/37.50)	WLHSAsGYLQLLPQAL.RSTWIPHVRSEG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     193.10|      46|      85|     545|     590|       9
---------------------------------------------------------------------------
  545-  590 (79.90/54.62)	VHVRMNIANSLIGTFGRFMQGKS.AWPSPALVETYCRMLT.YPDLEIL
  592-  626 (53.68/33.90)	LK...QFTSHIVLTAARH........QCCEMMYICCEILN.YRLFNI.
  632-  674 (59.52/38.52)	VHAIVTLQQTL..AFAKFQTNASlYW...MLERTLLLQFQwYPHYEIF
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      41.83|      13|      85|     298|     319|      13
---------------------------------------------------------------------------
  181-  194 (21.26/ 6.52)	LPaYF..VITEIIKNL
  302-  316 (20.56/22.55)	IP.YFeeVITEIILEL
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP06183 with Med23 domain of Kingdom Metazoa


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) QQQQQQQQQQQQQQQPQQPQQQQQQQQQPQPQQSNVVVGS
765
804










Molecular Recognition Features






MoRF SequenceStartStop




NANANA