<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP06157

Description Ubinuclein-2
SequenceMDFVESSLAKKKKTLPTIRLDVSMKVHSGKAYPEIHLPSLVKEQLGIDVNEYGVDPSTRSEEYQKLSGIVKKCEQRFGGKGRKGCIGRVEDFIDLGFGYDLNDPFIDDAEGYELLVPSTLSTQHGGFYVNRGELEFCEMTDDHENPGKSSRKQISTEAKTSKNVGGQLESHYRSNSFKAAAKLKKKSLNTKHRSQIQVLKKVPNKESKEKCEANDKHISDVINSIAQVDISAPEVHDSIIDGIILSVLDKQTSAKKLPVPASETVNKEPPNGDKPRTSAESFNLASASGGGGGAVANLPEVTKKVTLVGQPPTLALNNRSPKCHKLPSAILKMNEQIEKLIGDHGKKVLFWNRQAVELLVKVSDMCGQCGLNKFERGAVFNDLSARVKVPRPELMAALKRMGRRSLNSNIRTSNSSSDVTQTVADSSPNLPQRCNSEGNLNATKNADNLVLPGSNTFSNSQRLRQAIIKLKREVDAVMPNLLRDYKEICAEADKRKQEIMTAKSVTENDNFRPKTVYKPRKKFQWNVTVQSRLKELFTELAISTCLKPGNADSLQMENLDPFFDWLSTSVWPDSWMNSRELKKMFSVFFMQNRCVKEKAVGGAFPSSASNLNSPVAATAAAVSSPPSSSSGIIIDLTTTNGATTTTTTATTTTTTTTTTTTTTTTTTITTTTTTTTTTTGTAVSSPSNVKRPRVGETSPSTPQSAISQIASALVGPSTSRSFDAPPVLTAQQMPRAQIQQQQQQQQQQQQQQQLQQQSQQQKQLHLQQIQQQQQQSNQHELQQHQQKLQQTHHHYQQLLLQPQQQQQQQQQQQQQQQQQQQQQQQQQQQQLLTQPQQQQQPQQQSTSLSQIQTVKSNCQQAVSGSTPASSMLTQTTAKLQLYQKMVQESGKVPPFPSAIKSHSVQQSLAVGGKFVAGSVPFDATFIRMGGTIGVFQSQHPGPSASPSSPITRNALPHHHHHPLIGQPTMQAVNFTWNRQSIGRQFLASRTTTPRQLASGEGASIRLPQSQPSGNGSTLLRPNPRGPCRRVRTRRRFCRGPTALESCEATGQPLLPGGSRPAVAGRCSKSSCRRPRNPASARRRA
Length1084
PositionTail
OrganismTrichinella patagoniensis
KingdomMetazoa
LineageEukaryota> Metazoa> Ecdysozoa> Nematoda> Enoplea> Dorylaimia> Trichinellida> Trichinellidae> Trichinella.
Aromaticity0.04
Grand average of hydropathy-0.717
Instability index61.38
Isoelectric point9.80
Molecular weight119238.93
Publications









Function






Annotated function


GO - Cellular Component
nucleus	GO:0005634	IEA:InterPro

GO - Biological Function
GO - Biological Process
chromatin organization	GO:0006325	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP06157
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             5|     162.94|      17|      17|     737|     753|       1
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  733-  750 (31.85/10.56)	MPRaQI....QQ...QQQQQQQQQQ
  770-  786 (31.90/10.59)	QQQ.QQ....QS...NQHELQQHQQ
  787-  810 (24.69/ 6.63)	KLQ.QThhhyQQlllQPQQQQQQQQ
  811-  827 (40.41/15.26)	QQQ.QQ....QQ...QQQQQQQQQQ
  828-  844 (34.09/11.79)	QQQ.LL....TQ...PQQQQQPQQQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      72.29|      18|      18|     643|     660|       2
---------------------------------------------------------------------------
  643-  660 (36.08/25.03)	TTTTTTATTTTTTTTTTT
  662-  679 (36.20/25.13)	TTTTTTITTTTTTTTTTT
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     206.08|      50|      52|     978|    1029|       3
---------------------------------------------------------------------------
  910-  970 (63.36/31.14)	...VGGKFVAGSVPFDATFIR.M..GGTIGVF.QSQHPGPS....ASPSSP.ITRnalphhhhhpliGqPTMQ
  978- 1029 (87.06/51.63)	RqsIGRQFLASRTTTPRQLASGE..GASIRLP.QSQPSGNG....STLLRP.NPR............G.PCRR
 1035- 1083 (55.67/26.83)	R......F..CR..GPTALESCEatGQPL.LPgGSRPAVAGrcskSSCRRPrNPA............S.ARRR
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      80.91|      19|      19|     686|     704|       4
---------------------------------------------------------------------------
  609-  627 (19.06/ 7.44)	.SNLNSP.VAATAAavSSPPS
  686-  704 (36.43/21.71)	PSNVKRPRVGETSP..STPQS
  706-  721 (25.42/12.66)	ISQIASALVG...P..STSRS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      39.50|      13|      17|     213|     225|       7
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  213-  225 (22.30/19.63)	ANDKH...ISDVINSI
  232-  247 (17.20/13.20)	APEVHdsiIDGIILSV
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     151.21|      48|     242|     113|     161|       8
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  113-  161 (79.73/60.23)	ELLVP.STLSTQHGGFYVNRGELeFCEMTDDHENP........GKSSRKQISTEAKTS
  357-  413 (71.49/48.89)	ELLVKvSDMCGQCGLNKFERGAV.FNDLSARVKVPrpelmaalKRMGRRSLNSNIRTS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      95.80|      23|      47|     525|     547|       9
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  525-  547 (38.18/23.38)	W.NVTVQSR.LKELFTELAI.STCLK
  551-  569 (27.08/14.64)	A.DSLQMEN.LDPFFDWL...STS..
  571-  596 (30.55/17.37)	WpDSWMNSReLKKMFSVFFMqNRCVK
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP06157 with Med15 domain of Kingdom Metazoa
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