<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP06157

Description Ubinuclein-2
SequenceMDFVESSLAKKKKTLPTIRLDVSMKVHSGKAYPEIHLPSLVKEQLGIDVNEYGVDPSTRSEEYQKLSGIVKKCEQRFGGKGRKGCIGRVEDFIDLGFGYDLNDPFIDDAEGYELLVPSTLSTQHGGFYVNRGELEFCEMTDDHENPGKSSRKQISTEAKTSKNVGGQLESHYRSNSFKAAAKLKKKSLNTKHRSQIQVLKKVPNKESKEKCEANDKHISDVINSIAQVDISAPEVHDSIIDGIILSVLDKQTSAKKLPVPASETVNKEPPNGDKPRTSAESFNLASASGGGGGAVANLPEVTKKVTLVGQPPTLALNNRSPKCHKLPSAILKMNEQIEKLIGDHGKKVLFWNRQAVELLVKVSDMCGQCGLNKFERGAVFNDLSARVKVPRPELMAALKRMGRRSLNSNIRTSNSSSDVTQTVADSSPNLPQRCNSEGNLNATKNADNLVLPGSNTFSNSQRLRQAIIKLKREVDAVMPNLLRDYKEICAEADKRKQEIMTAKSVTENDNFRPKTVYKPRKKFQWNVTVQSRLKELFTELAISTCLKPGNADSLQMENLDPFFDWLSTSVWPDSWMNSRELKKMFSVFFMQNRCVKEKAVGGAFPSSASNLNSPVAATAAAVSSPPSSSSGIIIDLTTTNGATTTTTTATTTTTTTTTTTTTTTTTTITTTTTTTTTTTGTAVSSPSNVKRPRVGETSPSTPQSAISQIASALVGPSTSRSFDAPPVLTAQQMPRAQIQQQQQQQQQQQQQQQLQQQSQQQKQLHLQQIQQQQQQSNQHELQQHQQKLQQTHHHYQQLLLQPQQQQQQQQQQQQQQQQQQQQQQQQQQQQLLTQPQQQQQPQQQSTSLSQIQTVKSNCQQAVSGSTPASSMLTQTTAKLQLYQKMVQESGKVPPFPSAIKSHSVQQSLAVGGKFVAGSVPFDATFIRMGGTIGVFQSQHPGPSASPSSPITRNALPHHHHHPLIGQPTMQAVNFTWNRQSIGRQFLASRTTTPRQLASGEGASIRLPQSQPSGNGSTLLRPNPRGPCRRVRTRRRFCRGPTALESCEATGQPLLPGGSRPAVAGRCSKSSCRRPRNPASARRRA
Length1084
PositionTail
OrganismTrichinella patagoniensis
KingdomMetazoa
LineageEukaryota> Metazoa> Ecdysozoa> Nematoda> Enoplea> Dorylaimia> Trichinellida> Trichinellidae> Trichinella.
Aromaticity0.04
Grand average of hydropathy-0.717
Instability index61.38
Isoelectric point9.80
Molecular weight119238.93
Publications









Function






Annotated function


GO - Cellular Component
nucleus	GO:0005634	IEA:InterPro

GO - Biological Function
GO - Biological Process
chromatin organization	GO:0006325	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP06157
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             5|     162.94|      17|      17|     737|     753|       1
---------------------------------------------------------------------------
  733-  750 (31.85/10.56)	MPRaQI....QQ...QQQQQQQQQQ
  770-  786 (31.90/10.59)	QQQ.QQ....QS...NQHELQQHQQ
  787-  810 (24.69/ 6.63)	KLQ.QThhhyQQlllQPQQQQQQQQ
  811-  827 (40.41/15.26)	QQQ.QQ....QQ...QQQQQQQQQQ
  828-  844 (34.09/11.79)	QQQ.LL....TQ...PQQQQQPQQQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      72.29|      18|      18|     643|     660|       2
---------------------------------------------------------------------------
  643-  660 (36.08/25.03)	TTTTTTATTTTTTTTTTT
  662-  679 (36.20/25.13)	TTTTTTITTTTTTTTTTT
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     206.08|      50|      52|     978|    1029|       3
---------------------------------------------------------------------------
  910-  970 (63.36/31.14)	...VGGKFVAGSVPFDATFIR.M..GGTIGVF.QSQHPGPS....ASPSSP.ITRnalphhhhhpliGqPTMQ
  978- 1029 (87.06/51.63)	RqsIGRQFLASRTTTPRQLASGE..GASIRLP.QSQPSGNG....STLLRP.NPR............G.PCRR
 1035- 1083 (55.67/26.83)	R......F..CR..GPTALESCEatGQPL.LPgGSRPAVAGrcskSSCRRPrNPA............S.ARRR
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      80.91|      19|      19|     686|     704|       4
---------------------------------------------------------------------------
  609-  627 (19.06/ 7.44)	.SNLNSP.VAATAAavSSPPS
  686-  704 (36.43/21.71)	PSNVKRPRVGETSP..STPQS
  706-  721 (25.42/12.66)	ISQIASALVG...P..STSRS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      39.50|      13|      17|     213|     225|       7
---------------------------------------------------------------------------
  213-  225 (22.30/19.63)	ANDKH...ISDVINSI
  232-  247 (17.20/13.20)	APEVHdsiIDGIILSV
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     151.21|      48|     242|     113|     161|       8
---------------------------------------------------------------------------
  113-  161 (79.73/60.23)	ELLVP.STLSTQHGGFYVNRGELeFCEMTDDHENP........GKSSRKQISTEAKTS
  357-  413 (71.49/48.89)	ELLVKvSDMCGQCGLNKFERGAV.FNDLSARVKVPrpelmaalKRMGRRSLNSNIRTS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      95.80|      23|      47|     525|     547|       9
---------------------------------------------------------------------------
  525-  547 (38.18/23.38)	W.NVTVQSR.LKELFTELAI.STCLK
  551-  569 (27.08/14.64)	A.DSLQMEN.LDPFFDWL...STS..
  571-  596 (30.55/17.37)	WpDSWMNSReLKKMFSVFFMqNRCVK
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP06157 with Med15 domain of Kingdom Metazoa


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) EATGQPLLPGGSRPAVAGRCSKSSCRRPRNPASARRRA
2) EMTDDHENPGKSSRKQISTEAKTSKNVGGQLE
3) GRQFLASRTTTPRQLASGEGASIRLPQSQPSGNGSTLLRPNPRGPCRRVRTRR
4) GTIGVFQSQHPGPSASPSSPITRNALPHHHHHPLIGQPTMQAVN
5) KKLPVPASETVNKEPPNGDKPRTSAESFNLA
6) LQQIQQQQQQSNQHELQQHQQKLQQTHHHYQQLLLQP
7) SGIIIDLTTTNGATTTTTTATTTTTTTTTTTTTTTTTTITTTTTTTTTTTGTAVSSPSNVKRPRVGETSPSTPQSAISQIASALVGPSTSRSFDAPPVLTAQQMPRAQIQQQQQQ
8) SLNSNIRTSNSSSDVTQTVADSSPNLPQRCNSEGN
1047
138
982
930
255
766
630
405
1084
169
1034
973
285
802
744
439










Molecular Recognition Features






MoRF SequenceStartStop




1) PLLPGGSR
2) SCRRPRNPAS
1052
1070
1059
1079