<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP06155

Description Uncharacterized protein (Fragment)
SequenceLKINYGKKYKVTNFDVFSLFLHFPSVAFKMSQQNQNSFIQTFPLPPRPLNSNGNNLDANYGYPQGIGQSSVSSPIQSLVNSFGSRREVPSPSPASVSESTNVAPGKTTQADESQQEHHAEREAWSAQGSKAFNVNPFFAFSMSQILQSNDESGPLALCIIGRDFTREVINRTCDICGALKSLQLPTAPEAVKQHQDKLQRINESLKQVNIILERLEVIDRKIADFRKELLPADAEDHLKVLIFLNVCSIVCNYQFFQDLVTYDGKNEWLRKLTEERKSREVFTQTKQQYDEVKKELEKHAPSCSARSFNFCSLKLAQFDPREFGLRLKPYIANSDDIHIPFRRPFFSCTNSLIYPDYNSYFIPIIRNLSSKKSKNDSVSESLVKRRVSFNFSAVYSQVVNQCSSTEKSPTHYFERGKPNWDQLQHVIYRLSETVPTFFLRRLDYTFYSDDVLFLNRICGSEVKGLRNYWLHLATLSVLSRIPCPYIEMKILNCMPIVEEGSVHLRWRVLYLTVPEFLYVVVRERSADIETLRRNARWFDGFSYFYVGSDGLVYKHVADRVMRDPEEIAANSKRVGLLNRLLGSSARSPVF
Length590
PositionHead
OrganismTrichinella patagoniensis
KingdomMetazoa
LineageEukaryota> Metazoa> Ecdysozoa> Nematoda> Enoplea> Dorylaimia> Trichinellida> Trichinellidae> Trichinella.
Aromaticity0.11
Grand average of hydropathy-0.380
Instability index55.56
Isoelectric point8.94
Molecular weight67829.33
Publications









Function






Annotated function


GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP06155
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      47.32|      14|      29|     224|     241|       1
---------------------------------------------------------------------------
  224-  237 (23.89/ 8.82)	DFRKELLPADAEDH
  254-  267 (23.43/10.72)	QFFQDLVTYDGKNE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     199.51|      58|     279|      22|      82|       2
---------------------------------------------------------------------------
   22-   82 (99.96/56.20)	HFPSV...AFKMSQQNQNSF.IQTFPLPPRPLNSNGNNLDANYGYPqgiGQSSVSSPIQSLVNSF
  299-  360 (99.55/49.84)	HAPSCsarSFNFCSLKLAQFdPREFGLRLKPYIANSDDIHIPFRRP...FFSCTNSLIYPDYNSY
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      65.35|      24|     280|     169|     201|       3
---------------------------------------------------------------------------
  169-  201 (32.20/46.08)	INRtcdICGA.LKSLQ...LPTAPEAVkqhqdkLQRI
  454-  481 (33.14/21.21)	LNR...ICGSeVKGLRnywLHLATLSV......LSRI
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP06155 with Med30 domain of Kingdom Metazoa
Unable to open file!