<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP06136

Description R3H domain-containing protein 2 (Fragment)
SequenceLHNTNNNNNNNIFVGLSFEFREFHGVDPEKFFKDTMRKNVRDRNILFEFESELVNFIQNENCQVKEFPGMCSYYRMLLHRVSAYFGLEHNVIAGGTSLAVKKTPYTRIPTVNFQSLYNECIEKQTLTTTSTKVTTIATTLATTTTTTTTTTATAIATTTTVSTTNVPVLLKRETEIGKENGGNTEVPKPEMKATKSIEEREQSYVLARARIFSKTSSSSTDAAGEAARRFCAKPWSSAENNPENSCAMFSQQQKCLPQHYGYVNNCSNARNLPIPPVEATPYPQPPYRLSRIMINYFVVVVVINFNLPEDEILDMSNVPQFGRIFNPLSVFPGSPVLCLVQSIDHVPEGALLINPHTGEPLLNADGTLCFHSSRVLRLQQQMNTFTANNNVHPPHPHPHPPPMGSISPVDQMTATAMLPNNLQSLNINVDQPPTINTYTNEPSMAAAQFNAGMNQPGCNFAGVQSQMPCVVPPKPMMYGAQTGPVNGSTTDISQMAMASNPSYPFYYPSYYSNYHQAVPMAAFNPPATVTDEQQQQLLQQQQQQLQLQLQQQQQQQQQQQQQQQQQQQQQQQQQQQPQQQSQQQQQQQQITTAESVNSNEELMLNRYGDAETVFAAPVMHPMNNYQGNVFDQYGIGSQDDHQNE
Length644
PositionKinase
OrganismTrichinella pseudospiralis (Parasitic roundworm)
KingdomMetazoa
LineageEukaryota> Metazoa> Ecdysozoa> Nematoda> Enoplea> Dorylaimia> Trichinellida> Trichinellidae> Trichinella.
Aromaticity0.08
Grand average of hydropathy-0.616
Instability index59.06
Isoelectric point5.63
Molecular weight72181.84
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
nucleic acid binding	GO:0003676	IEA:UniProtKB-UniRule

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP06136
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     105.76|      17|      17|     550|     566|       1
---------------------------------------------------------------------------
  531-  547 (31.27/11.51)	DEQQQQLLQQQQQQLQL
  548-  564 (36.82/14.64)	QLQQQQQQQQQQQQQQQ
  565-  581 (37.68/15.12)	QQQQQQQQQQQQPQQQS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      54.32|      17|      18|     127|     144|       2
---------------------------------------------------------------------------
  127-  143 (29.51/22.45)	TTTSTKVTTIATT..LATT
  146-  164 (24.81/12.18)	TTTTTTATAIATTttVSTT
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      54.53|      10|      23|     495|     504|       3
---------------------------------------------------------------------------
  476-  484 (17.20/ 8.15)	M.MYGAQTGP
  495-  504 (21.20/12.03)	MAMASNPSYP
  520-  526 (16.13/ 7.12)	MA.AFNP..P
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      68.52|      22|      30|     318|     342|       5
---------------------------------------------------------------------------
  318-  342 (35.52/31.44)	VPQFGRIFNPLSvfpGSPVL......CLVQS
  346-  373 (33.00/19.66)	VPEGALLINPHT...GEPLLnadgtlCFHSS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      99.34|      24|      30|     379|     402|       6
---------------------------------------------------------------------------
  379-  398 (33.51/13.61)	...........QQQMNTFTANNNVHPPHPHP
  399-  429 (31.22/12.16)	HPPPmgsispvDQMTATAMLPNNLQSLNINV
  430-  451 (34.60/14.30)	DQPP.........TINTYTNEPSMAAAQFNA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      34.09|      11|      17|     165|     178|      10
---------------------------------------------------------------------------
  165-  178 (14.22/17.73)	NVPvllKRETEIGK
  185-  195 (19.87/13.48)	EVP...KPEMKATK
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP06136 with Med12 domain of Kingdom Metazoa


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) QLQQQQQQQQQQQQQQQQQQQQQQQQQQQPQQQSQQQQQQQQITTAESVNSNEELMLNRYGDAETVFAAPVMHPMNNYQGNVFDQYGIGSQDDHQNE
2) QMNTFTANNNVHPPHPHPHPPPMGSISPVDQMT
3) VPVLLKRETEIGKENGGNTEVPKPEMKATKSIEE
548
381
166
644
413
199










Molecular Recognition Features






MoRF SequenceStartStop




1) FYYPSYY
505
511