<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP06131

Description Actin-interacting protein 1 (Fragment)
SequenceLEYKMNYHLENVFAALPRTTRGMPMVLNGDPKGKKFLYCNGNSVVIRDLENPKISDVYTEHSTLTTVAKYSPNGSYIASGDKSGKIRIWDTTQKEHILKKEYQPLPGAVRDIGWSEDGQRLAVVGDGREKFGHVFLFETGTSNGTLCGQTKALNSVDFRPVKPLRIVCASEDNSTAIFEGPPFKFKTLNYNHSRFAQCVRYAPDGELFASCGADGKVFVYEGLEGSVVKEFVDSACKDKAHDGSAYALSWKSDGRQLLTASADKTCKIWDVETGSVVSTFKFGNSIEDQQLACLWQGSYLLSVSLGGCINYLDVNNPNKPCMIIKGHSKPITALAIDPSRDTIFTGDMEGKIVRWKESSGQGEEFNHQGHKSQVQSMVCTSSTLISAGMDDMLASCQEDDSNSHWAVKLGSQPQAVAVREGDPKLIAVACLNEFLLYNGNNLSARQTINYEASAIAIHPTENLLAVGSGDNKIRLYEFSDAGSMQLLKEESHLGAITSLRFSADGKYIAVADATRRLIPYTAKTLEVVVRAVKNDWTFHMAKINCLAWCPDSRHIATGSLDTNIIVWDMENAGEHPLIIKGAHKMSQITNIEWWNSNTLVSTGQDANLYFSNSMHNSQEKEEIVINYLFRFMKIFIIATSIQFFSEQKV
Length649
PositionTail
OrganismTrichinella pseudospiralis (Parasitic roundworm)
KingdomMetazoa
LineageEukaryota> Metazoa> Ecdysozoa> Nematoda> Enoplea> Dorylaimia> Trichinellida> Trichinellidae> Trichinella.
Aromaticity0.09
Grand average of hydropathy-0.280
Instability index30.00
Isoelectric point6.13
Molecular weight71835.52
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP06131
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     237.81|      48|      48|     501|     548|       1
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  201-  249 (60.17/36.24)	.YA.PDGELFASCGADGKVFVY...EGLEGSVVkefVDSACKDKA.HDGSAYALS
  250-  294 (57.62/34.40)	W..kSDGRQLLTASADKTCKIW...DVET.GSV...VSTFKFGNSIEDQQLACL.
  501-  547 (65.28/39.94)	.FS.ADGKYIAVADATRRLIPY...TAKTLEVV...VRAVKNDWTFHMAKINCLA
  548-  592 (54.74/32.32)	W..cPDSRHIATGSLDTNIIVWdmeNAGEHPLI...IKGAH.....KMSQITNIE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     138.98|      44|      48|     379|     425|       2
---------------------------------------------------------------------------
  379-  425 (65.12/55.33)	CTSSTLISAGmdDMLASCQEDDSNSHwAVKLGSQPQAVAVREGDPKL
  430-  473 (73.85/48.88)	CLNEFLLYNG..NNLSARQTINYEAS.AIAIHPTENLLAVGSGDNKI
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     148.23|      42|     263|      48|      89|       3
---------------------------------------------------------------------------
   48-   89 (74.65/44.64)	DLENP.KISDVYTEHSTLTTVAKYSPNGSYIASGDKSGKIRIW
  313-  355 (73.58/43.91)	DVNNPnKPCMIIKGHSKPITALAIDPSRDTIFTGDMEGKIVRW
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP06131 with Med16 domain of Kingdom Metazoa
Unable to open file!