<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP06130

Description Actin-interacting protein 1 (Fragment)
SequenceLEYKMNYHLENVFAALPRTTRGMPMVLNGDPKGKKFLYCNGNSVVIRDLENPKISDVYTEHSTLTTVAKYSPNGSYIASGDKSGKIRIWDTTQKEHILKKEYQPLPGAVRDIGWSEDGQRLAVVGDGREKFGHVFLFETGTSNGTLCGQTKALNSVDFRPVKPLRIVCASEDNSTAIFEGPPFKFKTLNYNHSRFAQCVRYAPDGELFASCGADGKVFVYEGLEGSVVKEFVDSACKDKAHDGSAYALSWKSDGRQLLTASADKTCKIWDVETGSVVSTFKFGNSIEDQQLACLWQGSYLLSVSLGGCINYLDVNNPNKPCMIIKGHSKPITALAIDPSRDTIFTGDMEGKIVRWKESSGQGEEFNHQGHKSQVQSMGDPKLIAVACLNEFLLYNGNNLSARQTINYEASAIAIHPTENLLAVGSGDNKIRLYEFSDAGSMQLLKEESHLGAITSLRFSADGKYIAVADATRRLIPYTAKTLEVVVRAVKNDWTFHMAKINCLAWCPDSRHIATGSLDTNIIVWDMENAGEHPLIIKGAHKMSQITNIEWWNSNTLVSTGQDANLYFSNSMHNSQEKEEIVINYLFRFMKIFIIATSIQFFSEQKV
Length606
PositionTail
OrganismTrichinella pseudospiralis (Parasitic roundworm)
KingdomMetazoa
LineageEukaryota> Metazoa> Ecdysozoa> Nematoda> Enoplea> Dorylaimia> Trichinellida> Trichinellidae> Trichinella.
Aromaticity0.10
Grand average of hydropathy-0.290
Instability index28.72
Isoelectric point6.50
Molecular weight67314.56
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP06130
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     203.90|      41|      42|     496|     536|       1
---------------------------------------------------------------------------
  249-  294 (43.27/23.33)	SWKSDGRQ.LLTASADKTCKIWD.VETGS......vvstfkfgnsiEDQQLACL
  295-  334 (42.33/22.67)	.WQGSYLLsVSLG...GCINYLD.VNNPNKPCMII.......kghsK..PITAL
  504-  548 (66.58/39.46)	AWCPDSRH.IATGSLDTNIIVWD.MENAGEHPLII.......kgahKMSQITNI
  549-  594 (51.71/29.16)	EWWNSNTL.VSTGQ.DANLYFSNsMHNSQEKEEIV......inylfRFMKIFII
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     129.68|      25|      41|     156|     180|       2
---------------------------------------------------------------------------
   70-   91 (26.79/11.34)	..YSPNGSYIA...SGDksGKIRIWDT
  156-  180 (39.95/19.79)	VDFRPVKPLRIVCASED..NSTAIFEG
  199-  222 (41.05/20.49)	VRYAPDGELFASCGA.D..GKVFVYEG
  416-  434 (21.90/ 8.20)	....PTENLLAV.GSGD..NKIRLYE.
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     100.40|      30|     346|      98|     128|       5
---------------------------------------------------------------------------
   98-  128 (50.00/35.06)	LKKEYQPLpGAVRDIGWSEDGQRLAVVGDGR
  443-  472 (50.40/30.24)	LLKEESHL.GAITSLRFSADGKYIAVADATR
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      99.08|      29|     346|      29|      57|       6
---------------------------------------------------------------------------
   29-   57 (53.65/40.98)	GDPKG......KKFLYCNGNSVVIRDLENPKISDV
  378-  412 (45.43/33.51)	GDPKLiavaclNEFLLYNGNNLSARQTINYEASAI
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP06130 with Med16 domain of Kingdom Metazoa
Unable to open file!