<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP06129
Description |
Mediator of RNA polymerase II transcription subunit 1 (Fragment) |
Sequence | LDIMSKDLQLLMEHLRQKSQHCMSWKDILKSAKVNLMEKRSPLDAQDRVEVAKSYERLLQGLRAYELFGRLEDIATKMNLTFVRTPGSANSQSCFITADCFFLEICAEETGSVFLVNVTHEKQTSESVLLRDIINDKRWTELQKHLWGLCTAYIQCKDIDTKNQAFKFMQNLENILHIQSLQHLNDNTLPVVEYLRTSDMYFFRRREVGDPPRLYFFCTPLSFWDSETGDFKQLFQNEVDNVMDVSKFKSVIYAELAMENVQGEQLLSISMQSVNTLGQFNDVPLSMQIAAVFTLTFPEKLIISVNSVTKIEALTGFKPAFSNQSKILDLILDEILPSGFSVLRSFVLLEDQLHYYTVDLEGCLTEGVVLDKIFWTNLEVLHKILPILRTEALFKHMFTSFIRNIATTQQQFAQKMFRHDIHVIPSPDLSILECQVKLPQEREFFYIVFRLAPINEISVKVAGVDNADGNLNDIAYKVFSRVWSIPVTVRALLKQLLRLSERNVVDGNGGSGDQNAVFPMQIDCDRSLHLSSDSNYAAHSSVSIPDGNYNMSEYSVCNDANDFAVAVAVADDHDDADADAVISVSGIAQSLNIEQQMQKLIVNVDKVLELSLIHI |
Length | 615 |
Position | Middle |
Organism | Trichinella pseudospiralis (Parasitic roundworm) |
Kingdom | Metazoa |
Lineage | Eukaryota> Metazoa> Ecdysozoa> Nematoda> Enoplea> Dorylaimia>
Trichinellida> Trichinellidae> Trichinella.
|
Aromaticity | 0.09 |
Grand average of hydropathy | -0.055 |
Instability index | 47.48 |
Isoelectric point | 5.08 |
Molecular weight | 69920.25 |
Publications | |
Function
Annotated function |
Component of the Mediator complex, a coactivator involved in
the regulated transcription of nearly all RNA polymerase II-dependent
genes. Mediator functions as a bridge to convey information from gene-
specific regulatory proteins to the basal RNA polymerase II
transcription machinery. Mediator is recruited to promoters by direct
interactions with regulatory proteins and serves as a scaffold for the
assembly of a functional preinitiation complex with RNA polymerase II
and the general transcription factors.
ECO:0000256 RuleBase:RU364059
|
GO - Cellular Component | mediator complex GO:0016592 IEA:InterPro
|
GO - Biological Function | transcription coregulator activity GO:0003712 IEA:InterPro
|
GO - Biological Process | regulation of transcription by RNA polymerase II GO:0006357 IEA:InterPro
|
Interaction
Repeat regions
Repeats |
>MDP06129
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 89.78| 31| 282| 302| 335| 2
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269- 300 (48.63/29.64) ISMQSVNTLGQFNDV.P.LSMQiAAVFTLTFPEK
303- 335 (41.15/31.84) ISVNSVTKIEALTGFkPaFSNQ.SKILDLILDEI
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