<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP06120

Description Dynactin subunit 4 (Fragment)
SequenceLNNTFCRSCEDTMVKKIYPMNQNQSSTVSVPIELAEVTVMQGLRAVRDLRQAMSRLFDTLKDVRETPVTDEKAEESDLWLNFKSTLQKIMDNFEILEKCAVSLSKQPVQFLHPNLNQQIRSYCTDETQIYPDIVYVYEWMKRIRESAQWLYNFVSQMSRRSQSRCLRKVFLPVFLQVNLTFLSHLFPMIQRQFPGMHIFSLPLGRSVSFNVQTSAVDALRGPCTIFKVAILLRGLQIEWANVKGPEELNQNCLEKADIYKPSQYIVFQKMTENVKCMIAQFNSSYSNLQLPQTLIRQFFVDSIFCAQCMENRSIAEARAAKNRCEVCCECPVCGAKLEIRMKCENANSSGSEKSNENESENNNKQFRLQCFTCMWSSLEAGIPDDKFIIEKCNQPEPPYAKESKCIMERFRQMARIEKLQIERKKFMPKRLSLFQFHPDKFPMHDYLTKQQMSTSLESFSPLYEPSEDVEPLDSSIFVDPLYISDGNLWLLTSMEQRLRHPLLQPRYVKDLLPVKKQLLVKQSLRCPQCDHNISKGEYVPESIKFKINCSAPLIIPELRLAERVDFKLNEETKVVITITNGSLMDVVLFLLPDASENEHIKVSLPIGEISVPKFVYSTQFAEEGQELLKDETEGVVKRFGNKVFIEIMVTVQKNITPVTLSLILKHHHVGNVRLTEGEAEWLEHRVRMKLSDDVKLS
Length697
PositionTail
OrganismTrichinella pseudospiralis (Parasitic roundworm)
KingdomMetazoa
LineageEukaryota> Metazoa> Ecdysozoa> Nematoda> Enoplea> Dorylaimia> Trichinellida> Trichinellidae> Trichinella.
Aromaticity0.08
Grand average of hydropathy-0.306
Instability index54.36
Isoelectric point7.50
Molecular weight80671.54
Publications









Function






Annotated function


GO - Cellular Component
dynactin complex	GO:0005869	IEA:InterPro

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP06120
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     200.12|      59|      66|     275|     336|       2
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  275-  336 (97.31/80.15)	KCMIAQFNSS.YSNLQLPQTLIRQFFVDSIFCAQCMENRSIAEARAAKNRCEvCCECPVcgAK
  342-  401 (102.81/71.89)	KCENANSSGSeKSNENESENNNKQFRLQCFTCMWSSLEAGIPDDKFIIEKCN.QPEPPY..AK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      69.71|      18|      18|     529|     546|       3
---------------------------------------------------------------------------
  514-  527 (14.65/ 6.65)	....VKKQLL.VKQSLRCP
  529-  546 (31.55/24.10)	CDHNISKGEY.VPESIKFK
  549-  567 (23.51/15.79)	CSAPLIIPELrLAERVDFK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     122.25|      36|     226|     402|     437|       4
---------------------------------------------------------------------------
  402-  437 (63.24/45.70)	ESKCIMERFRQMARIEKLQIERKKFMPKRLSLFQFH
  631-  666 (59.01/42.14)	ETEGVVKRFGNKVFIEIMVTVQKNITPVTLSLILKH
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      48.75|      14|      68|      75|      88|       5
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   75-   88 (26.17/16.05)	ESDLWL.NFKSTLQK
  145-  159 (22.58/12.94)	ESAQWLyNFVSQMSR
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP06120 with Med27 domain of Kingdom Metazoa
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