<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP06114

Description Mediator of RNA polymerase II transcription subunit 12-like protein (Fragment)
SequenceLLSFSKDDQYRHECNQRQLLLFGSNSDQYSRKHILKKLTKELNKLWSKKTSAELTTTGLIRVRKIIDSESLCSLSRKIQNLVFYDQFAVMDCCCDAGIAQFNSFINGQSNCLPTLENFDFLLGLLEESSNFISLVEFMEAVICLLPKLEAQIVERNFQSANSLTLQYAVCMVGYMRKHHCYFIQLESVMCNIWRSLLLYVKSKTVVNSFSAERCVWVYLHDLYQCCSYIRSLHADLYLNSRDCIQRCLCVETKPSSCNDLRSLLADVSQEIMLDVLFQESDLVIEPNLIQRLVENANLCYAFAIVAVKTMCGLSDDTERLFNLVLFCADVTALCPNLNADWLAVFKILCCPFNSNQDQTSCDSLLNIDVSDHQCYQPLTVLTITLISRMCIRLEDFILHVAMPSLLPLWKHAGSAKVEKGPEASAKLTLHLLGKILLFFDYQGPKNALPAKTKGELSLICSSVDGMVPDAILTLLIAILMLDDSKVQELKSKENFDTKRSAKQFVEEDTNTAGNSDIGSTAIQLLELICRQEWTKRKFLHSTDLFDPKRLLNPLVNQTQAQRLLRMITRSDSEILLKKFDSCTTKKELISKVLDSLTIMNLWVSQMDLQLLLKQVANSQSESLHLVDTIAKSCMEVFQPQATFSFGEPSDDKDENAYLNALSFDEIAPCWLVAPLISRLPSFVQGRVLKAAVSILENCQARRDRNLFAQSSSLLAHQPFLSLVLICLRGQDDQREGLLSSLLKQIQEFVMRVKEVD
Length756
PositionKinase
OrganismTrichinella pseudospiralis (Parasitic roundworm)
KingdomMetazoa
LineageEukaryota> Metazoa> Ecdysozoa> Nematoda> Enoplea> Dorylaimia> Trichinellida> Trichinellidae> Trichinella.
Aromaticity0.08
Grand average of hydropathy0.041
Instability index42.79
Isoelectric point5.83
Molecular weight85710.54
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP06114
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     171.72|      42|      49|     534|     575|       1
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  489-  525 (46.04/27.82)	.....LKSKENFDTKRSAKQFVEEDTNTAGNSDIGSTAIQLL
  534-  575 (67.44/44.06)	TKRKFLHSTDLFDPKRLLNPLVNQTQAQRLLRMITRSDSEIL
  584-  623 (58.24/37.08)	TKKELI..SKVLDSLTIMNLWVSQMDLQLLLKQVANSQSESL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      34.71|      10|      16|       1|      10|       2
---------------------------------------------------------------------------
    1-   10 (19.64/10.81)	LLSF.SKDDQY
   19-   29 (15.07/ 6.63)	LLLFgSNSDQY
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     197.40|      47|      49|     106|     153|       3
---------------------------------------------------------------------------
   71-  102 (40.87/16.87)	................LCSLSRKIQNLVFYDQF..AVMdC.....CCDAGIAQFN
  106-  153 (73.55/39.75)	NGQS.NCLpTLENFDFLLGLLEESSNFISLVEFMEAVI.C.....LLPKLEAQIV
  156-  197 (47.80/21.05)	NFQSaNSL.TLQYAVCMVGYMRKHHCY..FIQ.LESVM.CniwrsLL........
  310-  339 (35.18/13.62)	................MCGLSDDTERLFNLVLFCADVT.A.....LCPNLNA...
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      65.88|      21|     475|     260|     281|       4
---------------------------------------------------------------------------
  229-  252 (32.01/12.74)	IRSLHADLylnSRDCIQRCLCVET
  260-  280 (33.87/18.27)	LRSLLADV...SQEIMLDVLFQES
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP06114 with Med12 domain of Kingdom Metazoa
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