<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP06112

Description Mediator of RNA polymerase II transcription subunit 23 (Fragment)
SequenceLKRLLDIPIPVHLQVDQRKSVEAVEKLIKTICDRKNNLLPAYFVITEIIKNLPEQRCFSHWRMADCFTEIIESFRPLAQLNSVCGRTFMTPIPGHVGFYFNAFWKLEALSLRFPLKGLLPYSQDLLNPQMRLLTHVFMHYTYRDAIAVLLGTAKPEKSRIPYFEEVITEIILELMFTAECDHSQLNPQAWRIISTQIIYLTLQQSICFTRLVKILHTKLTHYPYRYARNQLMWCLFNFLSGGMQKYSVEEFAVILDLYRLLYTGRDIFTVSGSDSSCVLMLAPTCIWIHILKKSPSMEVELPPTVNTQRKFLQEALKNKTQFNTDNYMVAVLCNAYSSTSEIFQQDLLPILLENLDNTRGHNSTQASGNFASNATNSMPFPNGNVSEVKLRPLKLEFLDSVSVHVRMNIANSLIGTFGRFMQGKNAWPSPALVETYCRMLTYADLEILGLKQFTSHIVLTAARHQCCEMMYICCEILNYRLFNIPSTYRVHAIVTLQQTLAFAKFQTNASLYWMLERTLLLQFQWYPHHEIFQAPFARLLNSFVAVAADGTRQSIAENEELMRIIILTLARSTVISNSDSCFIEGVYRELLNKLPCYSWPQSTLSVFPQVFCSHYTQQQQQQQQQQQQQQQQQQQQQQQPQPQQSSVVGSSQQQQQQQQQQQQQQNHLLLKQQVDEEYIKHRTFGSELSLIDYFTNTSTSTVYLCLLWRLVYDTGELPAVSMKILEVLGPRKVLIHLKSLADFLVYETNSADVNRCVDVLNRLIFKYAVVPLERFMLTMLLRDYEGNDAFYALLIVMLLVQRSEELRSAVADCVAMLPSDYWHCQDWNDKYQAYQLKHAERTWSQVHTELSRASLTPNDCPLPVYFGTRCLQMLPVVDLLLQKLVESPAACLKFLDSTLSILGPLYRFHPYPVSFLYSTFRFYEKRLVEAPAIKQKLALAVHGACVPSRDDHWLLSAEFVSCVGSGPVTDRGPWVPDLNYYATLVRRLMDTFSEPRQQWSRKSDLRFVEFNNFQTHALYCICIELMSLSVSVVDVGNALITLVTHWHSLVDKNTVMYWVNAIGLIFSALPISYMEPFYQTILTTLCSDHMNSMNTDVSNKLDFEKRSKLMEDCYPARILALCHAVWLHSASGYLQLLPQALRSTWIPHVRSEGQFLYVCHLVAPFLQRFYQERTKFTMDVSYSSEILF
Length1188
PositionTail
OrganismTrichinella pseudospiralis (Parasitic roundworm)
KingdomMetazoa
LineageEukaryota> Metazoa> Ecdysozoa> Nematoda> Enoplea> Dorylaimia> Trichinellida> Trichinellidae> Trichinella.
Aromaticity0.11
Grand average of hydropathy-0.055
Instability index50.91
Isoelectric point7.37
Molecular weight137381.28
Publications









Function






Annotated function


GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP06112
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     107.33|      29|      32|     608|     639|       1
---------------------------------------------------------------------------
  608-  636 (59.77/36.42)	PQVFCSHY..TQQQQQQQQQQQQQQQQQ...QQQ
  640-  673 (47.56/21.38)	PQPQQSSVvgSSQQQQQQQQQQQQQQNHlllKQQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      57.72|      15|      85|     131|     145|       2
---------------------------------------------------------------------------
  131-  145 (28.85/18.13)	RLLTHVFMHYTYRDA
  213-  227 (28.86/18.14)	KILHTKLTHYPYRYA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     186.41|      53|     171|     945|     999|       9
---------------------------------------------------------------------------
  945-  999 (97.56/62.44)	CVPSR.....DDHWLLSAEfvSCVGSGPVTDRGPWVPDLN......YYATLVRRLMDTFSEPRQQW
 1113- 1176 (88.85/51.07)	CYPARilalcHAVWLHSAS..GYLQLLPQALRSTWIPHVRsegqflYVCHLVAPFLQRFYQERTKF
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     114.49|      38|     278|     445|     490|      10
---------------------------------------------------------------------------
  445-  490 (57.58/56.42)	LEILG.......LKQFTSHIVLTAARHQccemMYICCEILNYRLFNipstYRV
  725-  769 (56.91/34.58)	LEVLGprkvlihLKSLADFLVYETNSAD....VNRCVDVLNRLIFK....YAV
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      75.66|      23|     307|     686|     710|      11
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  686-  710 (32.38/26.37)	SELSLIDyFTNTSTSTVYlCLLWRL
 1003- 1025 (43.28/24.87)	SDLRFVE.FNNFQTHALY.CICIEL
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP06112 with Med23 domain of Kingdom Metazoa
Unable to open file!