<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP06108

Description F-box-like/WD repeat-containing protein TBL1X
SequenceMATDSSTDEDSSKPDEDDNCSAPASLLESVPAEHLNFLVWKFFKDYGYHTTAELFAQNNAVKENAGIEDLSICKGSLNKLLEMLHFKSVVDGDIPETGSLYDLVPGECFLSESSSCTETSSSENYSEDSSFREVVVKYIMRTNYNYSICSLDWNFEDLLLTGSADKIVRLWNFEVKEEETRHSCREMTSFGDENDDVNLPVSNDVILVSWSPQQDLIASADSSGKLKIWKKDGSFMINCFNVPEDIVVMKWNVNGRYLLTAATDGIISIWSSSGNCIECCAPFEDDITDADWKDDATFSACSKDGMLIHCRVINANAESSFRGHVNSINMIKWDPTGNMAATCSSDMMVKVWQFGNERCIGCLRGHTAEVNTLSWHCTDPAILASGDDNGAVCVWDAIKAEILHMLHKHLEPVRILAFRPGSDMLISCSTDCVIYLWDGRNGKRLRKIGSGYDATVNVMMWNRSGERIAVGRQDGTANMETDEASDPAPVVVYSRRRIPTLRMRSPIPVEDLHYLVWRFLKDTGQHRIAKQFECESQVLCSMLDSELPYICFGSLEILLDALYKKCVQDGDIQESGSLLELVPARVYYPSEVVLSPDTDSSGSDSPSDHMLQSVRPIKMCRWGIKVVKILSKVGHNADVSNCAWNPKEDFLLTGSVDKIVHLWNLENDLTNMDENCILASLDLTTLQLSDSRHLLPNLTSVSWSPDGETASSVGLAGQFCIWKRDGSFLFTCSHPTNPILLLKWSTDGKHLLTASSNGVIVIWTASTGELYADYGPFSANVTDADWKDDSTFSVSFDNGTLFHCSPTDPFVMSTFEGHQMRVNMIRWDPAGKMLASCSDDQLVRIWRLNSQTYDFSLCGHTAEVDVLCWHDTDRAILASGSSDQSVRVWNVCRGENLYAFCFHTSPICTLQFRPGSDILASTELDNRIMLWNVKVGGLLEEIENDDQKRIYDLAWNRNGEKLAMVKEDGLIEVFYVESDQ
Length980
PositionTail
OrganismTrichinella pseudospiralis (Parasitic roundworm)
KingdomMetazoa
LineageEukaryota> Metazoa> Ecdysozoa> Nematoda> Enoplea> Dorylaimia> Trichinellida> Trichinellidae> Trichinella.
Aromaticity0.09
Grand average of hydropathy-0.231
Instability index44.27
Isoelectric point4.69
Molecular weight109592.21
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP06108
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
            13|     462.46|      39|      39|     298|     336|       1
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  147-  185 (30.66/12.55)	.....S.ICS........LDW...NF..E..dlLLT..GSADKIVRLWNFeVKE....................eET..RHSC...R
  193-  239 (22.36/ 7.15)	EN.D.D.VNLpvsndvilVSW...SP..Q.qdlIAS..ADSSGKLKIW.............................kkDGSFminC
  240-  279 (30.35/12.35)	FN.VPEdIVV........MKW...NV..NgrylLTA...ATDGIISIWS..SSG.....................NC..IEC.....
  298-  322 (21.59/ 6.65)	.................................FSA..CSKDGMLIHCRV.INA.....................NA..ESSF...R
  323-  364 (52.52/26.76)	GH.VNS.INM........IKW...DP..T..gnMAA.tCSSDMMVKVWQF.GNE.....................RC..IGCL...R
  365-  407 (50.33/25.34)	GH.TAE.VNT........LSWhctDP..A...iLAS..GDDNGAVCVWDA.IKA.....................EI..LHML...H
  408-  444 (32.35/13.65)	KH.LEP.VRI........LAF...RP..GsdmlIS...CSTD.....CVI.YLW.....................DG..RNGK...R
  634-  695 (30.56/12.49)	GH.NAD.VSN........CAW...NP..K.edfLLT..GSVDKIVHLWNL.ENDltnmdencilasldlttlqlsDS..RHLL....
  696-  732 (28.01/10.83)	....PN.LTS........VSW...SPdgE....TASsvG.LAGQFCIWK..RDG.....................SF..LFT....C
  733-  769 (26.56/ 9.88)	SHpTNP.ILL........LKW...ST..D.gkhLLT..ASSNGVIVIWTA.STG.....................E...........
  817-  858 (54.48/28.03)	GH.QMR.VNM........IRW...DP..A.gkmLAS..CSDDQLVRIWRL.NSQ.....................TY..DFSL...C
  859-  901 (55.06/28.41)	GH.TAE.VDV........LCW...HD..TdraiLAS..GSSDQSVRVWNV.CRG.....................EN..LYAF...C
  902-  933 (27.63/10.58)	FH.TSP.ICT........LQF...RP..G.sdiLAS..TELDNRIMLWNV.....................................
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     387.27|     112|     476|      23|     134|       2
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   23-  134 (203.18/131.58)	PASLLES.VPAEHLNFLVWKFFKDYGYHTTAELFAQNNAVKENAGIEDLS.ICKGSLNKLLEMLHFKSVVDGDIPETGSLYDLVPGECFL.SES..SSCTETSSSENYSED..SSFREV
  499-  617 (184.08/118.45)	PTLRMRSpIPVEDLHYLVWRFLKDTGQHRIAKQFECESQVLCSMLDSELPyICFGSLEILLDALYKKCVQDGDIQESGSLLELVPARVYYpSEVvlSPDTDSSGSDSPSDHmlQSVRPI
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      67.33|      16|     491|     282|     297|       3
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  282-  297 (33.91/19.47)	PFEDDITDADWKDDAT
  776-  791 (33.43/19.09)	PFSANVTDADWKDDST
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      79.94|      23|     491|     461|     483|       4
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  461-  483 (43.23/25.59)	WNRSGERIAVGRQDGTAN...METDE
  955-  980 (36.71/20.76)	WNRNGEKLAMVKEDGLIEvfyVESDQ
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP06108 with Med16 domain of Kingdom Metazoa
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