<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP06103

Description F-box-like/WD repeat-containing protein TBL1X
SequenceMATSEGENCSALPSDELNIGFDEDENCSTPPLSEHNRGFDEDANCSTPPADEHNSKFDEDEDCSTPRSAEHNSEFDEDADCSTPTLSEHNIGFDEDEECSTPSLSEIDSEFDVDSDCSTPTSVLSPFPEDQLNFLIWRFFKDHGYHVTAELFAEDNAVEENCGVEDLSICKGSLKKLLEMLHFKSIVDGDIPQDGNLYDLIPGECFLSESSSSTTETASVDNSSEDSSFTAVELKCIMCTNYNSSICSLDWSFEEDLLLTGSADKVVRLWNMKDEKGETKNSYREITCFEDENSGVNLPVSNGVVLVSWSPQGDLIASADSRGKIRICKKDGNFTINCFNVPEDIAILKWNVTERLLLTATVDGVISLWSARTGDCVGCFTPFEDDVTDADWKDGATFTACSKDGMLFHCCITSTDASGPFNGHENSINVIKWDPTGNMAATGSSDMMVKVWRFGNEECVGCLKGHTAEVNTLGWHSTDQAILASGSEDGVVCVWDVINAEMLHMLNGHMTPLRMVAFRPETDMLISCSSDSVICLWNGRNGKRLRKIGNGDRATVNVMMWNRSGQMIAVGRQDGTPSMETEETNVPEPVVVPSRRRIPTLWMESPIRAEDLHYLVWRFLKDTGQHRIAKQFELESQVLCSTLDSELPYVCFGSMEILMDALHKKCVQDGDIPEMGSLLELVPATQYHPSAVALSPETDSSRSDSPFDHMLQITDIRPINTCKWGIKVLKILSKVGHNSDVSNCAWNPKEDFLLTGSVDKIVHLWNLENDITNVDENCVLASLDLTTLQVTDCRHLLPDLTLVAWSPDGDTAASVGLAGQFCIWKRDGSFLFTCTHPTHSILLLKWSTDGKHLLTASSNGIIVIWTASTGEIYADYGPFSTNVTDADWKDDSTFSVCFDNGTLFHCSPTDPFVMSTFEGHQMRVNMIRWDPAGKMMASCSDDRLVRIWRLNSQTYDFSLCGHTAEVDVLCWHDTDRAILASGSSDQSVRVWNVNRGEILYVFSFHTSPICTLEFRPGSDILASSGLDNRIMLWNVKVGGMLKEIENDDQKRIYELAWNRNGEKLAIAKADGLTSEIWSTLYVGIEFYNHQSSSNIDLYDSSRQYRTTHRIIFLQSCDAH
Length1119
PositionTail
OrganismTrichinella sp. T6
KingdomMetazoa
LineageEukaryota> Metazoa> Ecdysozoa> Nematoda> Enoplea> Dorylaimia> Trichinellida> Trichinellidae> Trichinella> unclassified Trichinella.
Aromaticity0.08
Grand average of hydropathy-0.297
Instability index43.59
Isoelectric point4.53
Molecular weight124484.73
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP06103
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
            15|     635.68|      40|      40|     419|     458|       1
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  242-  280 (47.05/25.02)	.Y..................NS.....................SICSLDWSFEED.LLLTGSADKVVR.LWNMKDE...K.....GE..........TK
  281-  340 (31.36/13.99)	NSyreitcfedensgvnlpvSN.....................GVVLVSWSPQGD.LIASADSRGKIR.ICKKDGN...F...tiNC..........FN
  341-  381 (44.76/23.41)	VP..................ED......................IAILKWNVTER.LLLTATVDGVIS.LWSARTG...D...cvGC..........FT
  382-  422 (39.67/19.83)	PF..................ED.....................DVTDADWKDGAT.FTACSKDGMLFH.C.CITST...D...asGP..........FN
  423-  464 (57.43/32.32)	GH..................EN.....................SINVIKWDPTGN.MAATGSSDMMVK.VWRFGNE...E...cvGC..........LK
  465-  507 (48.43/25.99)	GH..................TA.....................EVNTLGWHSTDQaILASGSEDGVVC.VWDVINA...E...mlHM..........LN
  508-  550 (49.89/27.02)	GH..................MT.....................PLRMVAFRPETD.MLISCSSDSVIC.LWNGRNG...KrlrkiG............N
  736-  773 (53.93/29.85)	GH..................NS.....................DVSNCAWNPKED.FLLTGSVDKIVH.LWNLEND...I.....T............N
  774-  836 (33.62/15.58)	VD..................ENcvlasldlttlqvtdcrhllpDLTLVAWSPDGD.TAASVGLAGQFC.IWKRDGS...F...lfTC..........TH
  837-  877 (39.93/20.01)	P...................TH.....................SILLLKWSTDGK.HLLTASSNGIIV.IWTASTG...E...iyAD..........YG
  878-  918 (27.34/11.16)	PF..................ST.....................NVTDADW...........KDDSTFS.V.CFDNG...T...lfHCsptdpfvmstFE
  919-  960 (49.49/26.74)	GH..................QM.....................RVNMIRWDPAGK.MMASCSDDRLVR.IWRLNSQ...T...ydFS..........LC
  961- 1003 (45.56/23.97)	GH..................TA.....................EVDVLCWHDTDRaILASGSSDQSVR.VWNV..N...R.....GE......ilyvFS
 1004- 1046 (42.94/22.13)	FH..................TS.....................PICTLEFRPGSD.ILASSGLDNRIM.LWNVKVGgmlK.....EI..........EN
 1047- 1078 (24.29/ 9.02)	DD..................QK.....................RIYELAWNRNGE.KLAIAKADGLTSeIWS...........................
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             6|     204.77|      16|      16|      20|      35|       2
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   20-   35 (39.42/19.42)	GFDEDENCSTP.....PLSEH
   38-   53 (36.95/17.77)	GFDEDANCSTP.....PADEH
   56-   71 (33.92/15.74)	KFDEDEDCSTP.....RSAEH
   74-   89 (35.10/16.54)	EFDEDADCSTP.....TLSEH
   92-  107 (33.32/15.35)	GFDEDEECSTP.....SLSEI
  110-  130 (26.06/10.48)	EFDVDSDCSTPtsvlsPFPED
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     327.57|      94|     478|     131|     229|       3
---------------------------------------------------------------------------
  131-  229 (162.34/96.50)	QLNFLIWRFFKDHGYHVTAELFAEDNAVEenCGVED..LS.ICKGSLKKLLEMLHFKSIVDGDIPQDGNLYDLIPGECFLSESSSSTTETasvDNSSEDSSF
  611-  707 (165.23/87.75)	DLHYLVWRFLKDTGQHRIAKQFELESQVL..CSTLDseLPyVCFGSMEILMDALHKKCVQDGDIPEMGSLLELVPATQYHPSAVALSPET...DSSRSDSPF
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP06103 with Med16 domain of Kingdom Metazoa


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) MATSEGENCSALPSDELNIGFDEDENCSTPPLSEHNRGFDEDANCSTPPADEHNSKFDEDEDCSTPRSAEHNSEFDEDADCSTPTLSE
1
88










Molecular Recognition Features






MoRF SequenceStartStop




1) ENCSALPSDELNIGFDEDENCS
7
28