<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP06101

Description Zinc finger MIZ domain-containing protein 1 (Fragment)
SequenceLSTSKSKLHRKQHCSAGRTVSVMIDNKMISKPSMVTATQQYDELLWSRNGSPHGSAYTPSYSGMPPAYANGTTMLNYNSNPLSAATANVAGPVSGYSGDSTVVNGSKAVTQPTPNVNTCYPPQDMGAGPVPGPFNSAAASVYGPGSTAADFGPPSVAAPPVAAAVDHNQYAAATYQHQSAPQFSPVLVGYFQIPVYNGQQYPPVGNGPPPSYPIQGRLMQQNAMTRSQMPVSYMNSGSRVQSSNMTVGQSQSTSALRYSLQQTQQCVTNSGRPPTALPVMTPTMQAQQQQQQQQQQQQQQQQQQQQQQQSQSLSAQQSQQQSQLQQYPSNMPSIGQTGATLHHSQQTVVDPTTGAVTPYGTASQPPIVNGPYAKYPPNMPPRNTIYYGNPSSASQAAALPGKAVCNYVNQNFNPQSTMTPGYQHVQAVRQTHQMPIVPPNMVPNQRPIYPTANQYQVPTPIPALYSDVKPVILPSDDADPRMAFPVKDGVILQPFRLEHNIPVSQICFFIAPEQFGLLCSDPDLDIQLKCFHADDRLMYNNWPHNANVQIVVNNTPVVVRHIDRPLYVKTLCQPNKNTLQIAVQQCCCSHLFMLSLTTRPPVERVLSNLVRRKLLSVDNAIDKIKRSFQLAEMGDGQVADIERMSTTISLKCPITMGKITLPARCQDCRHIQCFDLKAFLILNKDRLHWQCPLCGRPAILDNLEIDQYVWGILTNLVKFPEVGEVLIDSNASWKAHASIGREQQQSLGCNPPKRAKTSEANCSTDPSVCSWNMTSVRNYASTSNNNNPVAVTGLQVPIERVPNTSISQIMDMKTTVPPNHTVKKQSQQQQQQQQQQQQQQQLQQQQQQQQQQLQQQQQQQYQYYLSPEQQQQMMHQQQQQQMMHQQQQQQMMQQQQHHHHQQQQQQQQQQQQQQQQALMNSVGSGGGAAAGGGHPTGSIENGNSRLMAEPSTPKQMLKYGPPTPATPSANPPSVGGPRSVGNPPSVEGSSGNGGGSGGNSGYVMQQCSTQANLQLNIDGNPTGSAPYTPASVGSAGSQQGSHCVNVASNEMCNTEFSDLTFDTADLLPGDTASENLGNFFADSTMPDPGEFIQYFESTNFGEFGLSTDRLDVPLFDLEDGKRKSVGILDDISSNPSKLLLDDHKKTANPKKTTHLKEEKKRSMAGDDDDDPLKPTLLSSSEMDDILSLLQS
Length1191
PositionKinase
OrganismTrichinella sp. T6
KingdomMetazoa
LineageEukaryota> Metazoa> Ecdysozoa> Nematoda> Enoplea> Dorylaimia> Trichinellida> Trichinellidae> Trichinella> unclassified Trichinella.
Aromaticity0.06
Grand average of hydropathy-0.663
Instability index59.82
Isoelectric point6.86
Molecular weight130326.18
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
zinc ion binding	GO:0008270	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP06101
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     125.12|      14|      15|     287|     300|       1
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  287-  300 (34.86/10.40)	QQQQQQQQQQQQQQ
  301-  314 (27.52/ 6.84)	QQQQQQQQQSQSLS
  823-  836 (29.76/ 7.93)	KKQSQQQQQQQQQQ
  837-  850 (32.98/ 9.49)	QQQQQLQQQQQQQQ
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     210.86|      52|      54|     921|     972|       2
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  335-  360 (29.35/ 7.37)	..............................GQTGATLHHSQQT.VV.DPTTGA.V.TP.YG
  365-  388 (48.39/16.83)	PPIVNGPYAKYPP........NMP...........................PRNT.IY.YG
  921-  960 (62.46/23.83)	............SVGS....GGGAAAGG..GHPTGSIENGNSR.LMAEPSTPKQM.LK.YG
  961- 1019 (70.67/27.91)	PPTPATPSANPPSVGGprsvGNPPSVEGssGNGGGS..GGNSGyVMQQCSTQANLqLNiDG
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      61.27|      15|      15|     884|     898|       3
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  863-  880 (26.08/ 7.67)	YylsPEQQQQMMHQQQQQ
  884-  898 (35.20/13.00)	H...QQQQQQMMQQQQHH
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     230.79|      50|      55|      81|     135|       4
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   49-   70 (33.40/ 9.94)	........................NGS.......PH.GSAYTPSYSGM.P.PA.Y..AN
   81-  135 (86.67/53.49)	PLSAAT.ANVAGPvsGYsgdSTVVNGSKAVTQPTPNVNTCYPPQDMGAGPVPG.P..FN
  136-  168 (43.43/16.99)	...SAA.ASVYGP............GSTAADFGPPSV.........AAPPVAA.AvdHN
  169-  213 (67.28/30.98)	QYAAATyQHQSAP..QF...SPVLVGYFQI..PVYN.GQQYPP..VGNGPPPSyP....
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      56.64|      21|      21|     400|     420|       7
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  408-  431 (30.71/13.25)	VNQNFNP.QSTMTP......gyqHVQAVRQT
  437-  467 (25.92/ 9.89)	VPPNMVPnQRPIYPtanqyqvptPIPALYSD
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      78.85|      20|      21|    1060|    1079|       8
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 1060- 1079 (33.93/23.46)	TF.DTADLLP....GDTASENLGNF
 1084- 1103 (29.15/19.02)	TMpDPGEFIQ.....YFESTNFGEF
 1106- 1126 (15.76/ 6.61)	ST.DRLD.VPlfdlEDGKRKSVG..
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      41.72|      13|      20|     216|     228|       9
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  216-  228 (23.94/11.22)	GRLMQQNAMT..RSQ
  237-  251 (17.78/ 6.33)	GSRVQSSNMTvgQSQ
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     164.25|      41|      43|     472|     512|      10
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  468-  509 (69.25/36.72)	VKP...vILPSD.DAD...PRM.AFPVKDGVILQPFRLEHNIPVSQICFF
  510-  553 (52.56/26.24)	IAPeqfgLLCSDpDLD...IQLkCFHADDRLMYNNW..PHNANV.QIVVN
  554-  587 (42.44/19.88)	NTP.............vvvRHI.DRPLYVKTLCQPNKNTLQIAVQQCC..
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      51.40|      15|      20|     689|     706|      11
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  689-  703 (30.50/11.47)	WQ..CPLCGRPAILDNL
  710-  726 (20.90/ 8.67)	WGilTNLVKFPEVGEVL
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      78.44|      22|      36|     729|     751|      13
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  729-  751 (36.89/29.59)	SNASWKaHASIGREQQQSLGCNP
  767-  788 (41.55/28.47)	SVCSWN.MTSVRNYASTSNNNNP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      46.41|      15|      15|    1142|    1156|      14
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 1142- 1156 (25.65/19.81)	DHKKT.ANPKKTTHLK
 1158- 1173 (20.77/14.36)	EKKRSmAGDDDDDPLK
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP06101 with Med12 domain of Kingdom Metazoa
Unable to open file!