<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP06088

Description Lysine-specific demethylase 8
SequenceMILLVRIGLALLQCCFGYTWSILECFFKKPKSVTDKVIVITGAARGIGKGLALLLAHLHAKIVLVDLDESTNKQTAEELRQETSACVYAYTADVTDPESMRQVANAIVTNPELGCPDVLVCSAGVLIPKLLEDHSDVEIYRTMNTIRAFYPYILKRGQGHIVAVSSYGGHFGNSYSCCYSASKFAVRGLMESLEWEIYDHGFGGEIKTTTIYPFFTRTDLLSSCNVTSDVIPVLTPEETSQGILKAILYEQTEAFIPFYGSLICYFFKGRTFKAIELEDFEAAVEICNFMLNTGHWSEVNISWRLLYSMVSLLLSIAHIANGRLKDALCSCDKGLLLGCPISGNILAKLASLLHCKMIDTYPLEDVLINDKFDQALASMNDVCEHFEHSVPRVECPSLETFQRDFLIPQNPVVIEGALESWQAMEKWNIAYLMSKCAYRTVPIEIGSKYTNDEWSQKLLTVTDFVHEYFNPDAREKAYLAQHQLFEQITELKDDIAVPDYCCLQCAPEDVDINAWFGPANTVSPLHTDPRDNLFAQVFGQKYLRLCHPTATKNLYPITDGLMSNTSQIDMEKIDYEKFPLVKNVKFYETIVKPGDLLFIPKATGIACDVMSSAGSAAVQSSLASGLLPSPSNLYYQSLGHITGGEGISRNGSRTPVSQRRVGHFTRARHHSSCDVHSLCDGVTFERCFDSQLPPADPQIHAGGFKSGFPFSARSSSNSYRQPTLSSHLSHGNLGYLQSDCDWSADLDPLVKNGRGSNEAPGCGSVSKIVNGRMTTTNCCPADCDALREDLRVAMEKLNATMGSIKSFWSPELKRERALRKEETAKMNMLQEQLKLSLVNNQKQSVLIEQLQNELRFQCNSGRSRRFPDDGPLIGHEDYRTVCQERDISDAVKELQYQLESQRQLLLSKDESVKRLLEALHSKGVPASVAQSCAEMELAQNRIVELEEKCSRLQAHCDDLESHLQQSHDGLSSLRKDAVIESLQDEVASYEAELKRLRSGGAIHEREFTDKMVTDKEYQELKLKADKLELELGQKTVEIQALYTRLSTAEESASDFKKHLELMKESNASKDQQATLLQSDIDALRGKLESKNEMIDQKAQQITELQADKNRLLSELNLLNEQHRISEVGLSTKDRKIDLLEETIRERDCELNLIRTRLNSSPGVIQEKKLQDEINRLVQERDLWRKRFNEEHECLAIERKRDGEAHEKENKDLRIAIASLQKEISDRQVFIESQNEKINDMVRQTEALTKENSLYKELNKTNGVDLLKAEIERLNQAVDESRSEVDRLLKIIHNSEKEKNEGRESGNDSKRFHSNTENADYQSVLMHKDRRIEELEEALKESVSITAEREMAVAQQKLNSQRAEQRIAALKDELKTMQEQYDELSIQLKQLRQEKVQSDATIKTMQEERKRYVDEVMQLKGEVLLAAIEEKDAHIAFLENFHGRKSSEEIDNVKKQKEELLQRLKEENARRVKLHNDPTLNFTDHFPKVSGIDLVRHWWPAMGIAWYDLVYLYSDPEKSDRQDVLLDSLQTALDNMDAKQAGFFSLTSETFFSTTTTNAKPVHLFQSSEFPETTFVLVGDTLGSASTFLFAEKSITQMIRNLDGAYCTKPISKVECRGNKYVISDFTVRTSVATIASNFKGILVEIEYRPCVAMQLCGDLMKEFCTALLGSAASAPPTFVGLTKPNQRYVPIDTIFQKMSVQTAGPNEQQSQAQPQPQQQQQQQPQQQQQQQQQ
Length1733
PositionHead
OrganismTrichinella sp. T6
KingdomMetazoa
LineageEukaryota> Metazoa> Ecdysozoa> Nematoda> Enoplea> Dorylaimia> Trichinellida> Trichinellidae> Trichinella> unclassified Trichinella.
Aromaticity0.07
Grand average of hydropathy-0.449
Instability index47.24
Isoelectric point5.45
Molecular weight195975.88
Publications









Function






Annotated function


GO - Cellular Component
cytoplasm	GO:0005737	IEA:UniProtKB-SubCell
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
methyltransferase activity	GO:0008168	IEA:UniProtKB-KW
oxidoreductase activity	GO:0016491	IEA:InterPro
transcription coregulator activity	GO:0003712	IEA:InterPro

GO - Biological Process
methylation	GO:0032259	IEA:UniProtKB-KW
regulation of transcription by RNA polymerase II	GO:0006357	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP06088
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     466.40|     157|     209|     220|     395|       1
---------------------------------------------------------------------------
  220-  395 (226.35/215.68)	LLSSCNVTSdvIPV.....LTPEETSQGILKAILYEQtEAFIPfYGSLICYFFKGRTFKAI.ELEDFEAAVEICNFMLNTghwSEVNI.SWRLLYSMVSLLLS......IAHIAnGR..LKdaLC..SCDKGLLlgcPISGNILAKLASLLHCKM.IDTYPL.EDVlindKFDQALASMNDVCehFEHSVPRVEC
  432-  607 (240.06/165.29)	LMSKCAYRT..VPIeigskYTNDEWSQKLLTVTDFVH.EYFNP.DAREKAYLAQHQLFEQItELKDDIAVPDYCCLQCAP...EDVDInAWFGPANTVSPLHTdprdnlFAQVF.GQkyLR..LChpTATKNLY...PITDGLMSNTSQIDMEKIdYEKFPLvKNV....KFYETIVKPGDLL..FIPKATGIAC
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     599.16|     140|     140|     980|    1119|       2
---------------------------------------------------------------------------
  853-  960 (114.90/64.88)	.............................ELR....FQCNS.G..RS.RRFPD.dgPLI.....GHEDY............................RTVCQERD.ISDAVKELQYQLES.....QRQLL..LS...KDesvkrlLEALHSKgvpasvAQSCAEM.ELAQNRIVELEEKCSRLQAHCDDLE
  980- 1119 (215.69/128.65)	ES.................LQDEVASYEAELK....RLRSG.GAIHE.REFTD...KMV.....TDKEYQELKLKA.DKLELELGQKTVEIQA.LYTRLSTAEES.ASDFKKHLELMKESNASKDQQATL..LQ...SD......IDALRGK......LESKNEMIDQKAQQITELQADKNRLLSELNLLN
 1120- 1261 (135.09/77.65)	EQhrisevglstkdrkidlLEETIRERDCELNlirtRLNSSpGVIQE.KKLQDeinRLV..........QERDLWR.KRFNEE...................HEClAIERKRDGEAHEKEN..KDLRIAIasLQ...KE......ISDRQVF......IESQNEKINDMVRQ.TEALTKENSLYKELNKTN
 1264- 1394 (133.48/76.63)	DL.................LK.......AEIE....RLNQ...AVDEsRSEVD...RLLkiihnSEKEKNEGRESGnDSKRFHSNTENADYQSvLMHKDRRIEEL.EEALKESVSITAEREMAVAQQKLN..SQraeQR......IAALKDE......LKTMQEQYDELSIQLKQLRQEK...........
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      75.49|      21|     285|     400|     420|       4
---------------------------------------------------------------------------
  400-  420 (38.48/24.26)	TFQRDF...LIPQNPVVIEGALES
  683-  706 (37.01/23.05)	TFERCFdsqLPPADPQIHAGGFKS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      86.77|      31|      34|    1398|    1431|       6
---------------------------------------------------------------------------
 1400- 1431 (45.99/34.22)	TIKTMQE..ERKRY..VDEVMQLKGEvLLAAIEEKD
 1433- 1467 (40.77/19.75)	HIAFLENfhGRKSSeeIDNVKKQKEE.LLQRLKEEN
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     155.54|      50|     655|      99|     158|       7
---------------------------------------------------------------------------
   99-  158 (76.13/66.19)	SMRQVANAIVTNPELgCP.DvlvCSAgvlipkLLED.HSDVE.IYRTMNTIRAFYPYILKRGQ
  764-  816 (79.41/45.85)	SVSKIVNGRMTTTNC.CPaD...CDA......LREDlRVAMEkLNATMGSIKSFWSPELKRER
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP06088 with Med20 domain of Kingdom Metazoa


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) LKIIHNSEKEKNEGRESGNDSKRFHSNTENADYQSVLMH
2) TAGPNEQQSQAQPQPQQQQQQQPQQQQQQQQQ
1288
1702
1326
1733










Molecular Recognition Features






MoRF SequenceStartStop




1) QPQQQQQQQPQQQQQQQQQ
1715
1733