<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP06082

Description Vacuolar protein sorting-associated protein 11-like protein
SequenceMSQQNQNSFIQTFPLPPRPLNSNGNNLDANYGYPQGIGPSSVSSPIQSLVNSFGSRREVPSPSPASVSESTNVAPGKTTQADESQQEHHAEREAWSAQGSKAFNVNPFFAFSMSQILQSNDNNGPLALCIIGRDFTREVINRTCDICGALKSLQLPTAPEAVKQHQDKLQRINESLKQVNIILERLEAIDRKIDNFRKELLPADAEDHLKDLVTYDGKNEWLRKLTEERKSREVFTQTKQQYDEVKKELETHAPSCSARSFNFCSLKLAQFDPREFGLRLKPYIANSDDIHIPFRRPFFSCTNSLIYPDYNSYFIPIIRNLSSKKSKNDSVSESLVKRRVSFNFSAVYSQVVNQCSSTEKSPTHYFERGKPNWDQLQHVIYRLSETVPTFFLRRLDYTFYSDDVLFLNRICGSEVKGLRNYWLHLATLSVLSRIPCPYIEMKILNCMPIVEEGSVHLRWRVLYLTVPEFLYVVVRERSADIETLRRNARWFDGFSYFYVGSDGLVYKHVADRVMRDPEEIAANSKRVGLLNRLLGSSARSPIWKQFNLDKEKKNLVDSYGLSIQLILATLAFASLIVKRLLEPKQTRRPWTIWFFDTSKQAVGSSVIHAMNIFLAGVFRGDPCTWYFVSFLLDSTLGLLIIYTGVKLVTAAASCRKDWSTLRFGEYGDPPQCRPWLHQCLAFVILSVIEKFFVTLLLLMRFWKSVREIALSPIRNPKVEVTLVILVFPFLINTIMFWVVDNFTMKRRAVSKKFNSNNSNSLIIANNGSSSSGIRRVHDESAVKLLDEYDNNSQQNDALALFPADNILQHRNSSTLAGIFVFFIHFNSDCESSTIIMASSLFQSWRRLVFFDRQLIADVENADESFTEFKDLNIACVAWKSNRVFIGEVDGGVHMYDKDFSDTYFKAYKVNLSLLYCPRSSDSLVSIGEDDNGVNPYLKVWLLDKLDKQGKPFAVRCSKTSPGNRPVKVTSVAVDSSGQLMVVGFEDSSILLYRGDVCKEKQPKSQLIRDGSTCASEGSIVGMELCDHSSQAVILYVVTTRFTFSFTISFKEKDITKTVLEIEGLHMRRCWALAGEELKNQFVVARNMGFYFYQPEEKAYEASFPDISEVFIAWNFIFILCMESGKLFRLKEMSIESQLDILFRKNLFDLAISIGEKQCQQEGTVEYLSILRGLFLQVRLDTDCFQCFEVELLKNRKRDYSNALKQYMRTIGTLDTSYVIRKLLDAHRIENLAEYLEAVFHAKLGTVDHSNVLLSCYIKMNAIDKINSFIQNKETVAPLDVEAAVKLFRKFGLYRQAAFLTKRHGYPKRCLDLLVSDLKDFKQAINYISSLESDVIAEFFTRYSKLLLENVPEETMTLLGEILKRDGCSEKNWVQSVVLRLIAHPDRLEAFLEQSLMANKVDVKLYNLLLYAYLRRYSSTMENDVAKEQISRKIDQLLKNISSDNQSLLEALRFCYQWAYHPGILYLLERQKMYSHLLKHQMFLKDYDSVISACLKYGDRRSGDKTLWSFALQYFSEDPTISEEYVKKLLTSSELTGDVHPMLAVQTLAKSKTLTFACVKDFLSHWVDKESKSIEMDEQDSLRLCNEIKRTEAIIDDIQKNPQIFQMSKCTACDIILETPTVHFLCKHSYHQHCFENYAESEAECPVCLLDKKRFQNQCKTDSSTSSEALNHSFKEELMNTNNVIGTLTSYFGKTLFPDKDVDAENCEIHQQDTSKSVQSLNPFEGELRISNDSSGVILSAKYSSFDLHKFTLLNFCFVMPNA
Length1762
PositionHead
OrganismTrichinella sp. T6
KingdomMetazoa
LineageEukaryota> Metazoa> Ecdysozoa> Nematoda> Enoplea> Dorylaimia> Trichinellida> Trichinellidae> Trichinella> unclassified Trichinella.
Aromaticity0.11
Grand average of hydropathy-0.237
Instability index47.40
Isoelectric point7.30
Molecular weight201959.70
Publications









Function






Annotated function


GO - Cellular Component
integral component of membrane	GO:0016021	IEA:UniProtKB-KW
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
metal ion binding	GO:0046872	IEA:UniProtKB-KW

GO - Biological Process
intracellular protein transport	GO:0006886	IEA:UniProtKB-UniRule
vesicle-mediated transport	GO:0016192	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP06082
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      53.41|      17|      31|    1203|    1219|       1
---------------------------------------------------------------------------
 1203- 1219 (30.46/23.61)	LKQYMRTI.....GTLDTSYVI
 1231- 1252 (22.95/15.67)	LAEYLEAVfhaklGTVDHSNVL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      47.45|      13|     120|     401|     413|       2
---------------------------------------------------------------------------
  401-  413 (24.82/17.16)	SDDVLFLNRICGS
  524-  536 (22.63/14.89)	SKRVGLLNRLLGS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      90.59|      28|     120|    1263|    1301|       3
---------------------------------------------------------------------------
    7-   35 (49.97/26.80)	NSFIQTfPLPPRPLNSNGN.NLDANYG.YPQ
 1266- 1295 (40.63/39.26)	NSFIQN.KETVAPLDVEAAvKLFRKFGlYRQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      22.02|      13|     120|     628|     685|       4
---------------------------------------------------------------------------
  582-  632 ( 3.89/47.81)	EPKQTrRPWtiwffdtskqavgssvihamniflagvfrgdpctwyfVSFLL
  668-  697 (18.13/10.35)	DPPQC.RPW....................lhqclafvilsviekffVTLLL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      99.81|      33|      84|    1367|    1423|       6
---------------------------------------------------------------------------
 1367- 1418 (38.46/69.38)	CSEknWVqsvvlrliAHPDRLeAFLEQSlmankvdvKLYNLLL..YAYLRRYSS
 1454- 1488 (61.35/33.52)	CYQ..WA........YHPGIL.YLLERQ........KMYSHLLkhQMFLKDYDS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      60.95|      20|      31|     844|     867|       8
---------------------------------------------------------------------------
  844-  867 (29.72/29.78)	WRRlvffDRQLIADVENA....DESFTE
  878-  901 (31.23/19.40)	WKS....NRVFIGEVDGGvhmyDKDFSD
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     102.97|      33|      87|    1330|    1363|      10
---------------------------------------------------------------------------
 1330- 1363 (49.50/34.60)	LESDVIAEFFTRYSKLLLENVPEETMTLLgEILK
 1420- 1452 (53.47/32.63)	MENDVAKEQISRKIDQLLKNISSDNQSLL.EALR
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     121.93|      37|     104|    1013|    1052|      12
---------------------------------------------------------------------------
 1013- 1052 (59.63/45.48)	CASEGSIVGMELCDHSSQAVILYvvtTRFTFSFTISFKEK
 1120- 1156 (62.31/39.95)	CMESGKLFRLKEMSIESQLDILF...RKNLFDLAISIGEK
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP06082 with Med30 domain of Kingdom Metazoa
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