<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP06013

Description F-box-like/WD repeat-containing protein TBL1X
SequenceMATGEGENCSALPSDELNIGFDEDENCSTPPLSEHNRGFDEDANCSTPPADEHNSKFDEDEDCSTPRSAEHNIGFDEGENCSTPPSAEHNSEFDEDADCSTPTLAEHNIGFDEDEDCSTPSLSEFDSEFDVDSDCSTPTSVLSPFPEDQLNFLIWRFFKDHGYHVTAEMFAEDNAVEENCGVEDLSICKGSLKKLLEMLHFKSIVDGDIPQDGNLYDLVPGECFLSESSSSTTETASVDNSSEDSSFTAVELKCIMCTNYNSSICSLDWSFEEDLLLTGSADKVVRLWNMKDEKGETKNSYREITCFEDENNGVNLPVSNGVVLVSWSPQGDLIASADSRGKIRICKKDGNFTINCFNVPEDIAILKWNVTERLLLTATVDGVISLWSARMGDCVGCFTPFEDDVTDADWKDGATFTACSKDGMLFHCCITSTDASGPFNGHENSINVIKWDPTGNMAATGSSDMMVKVWRFGNEECVGCLKGHTAEVNTLGWHSTDQAILASGSEDGVVCVWDVINAEMLHMLNGHMTPLRMVAFRPETDMLISCSSDSVICLWNGRNGKRLRKIGNGDRATVNVMMWNRSGQMIAVGRQDGTASMETEETNVPEPVVVTSRRRIPTLRMESPIRAEDLHYLVWRFLKDTGQHRIAKQFELESQVLCSTLDSELPYVCFGSMEILMDALHKKCVQDGDIPEMGSLLELVPATLYHPSEVALSPDTDSSRSDSPFDHMLQITDIRPINTCKWGIKVLKILSKVGHNSDVSNCAWNPKEDFLLTGSVDKIVHLWNLENDITNVDENCVLASLDLTTLQVTDCRHLLPDLTFVAWSPDGDTAASVGLAGQFCIWKRDGSFLFTCTHPTHSILLLKWSTDGKHLLTASSNGIIVIWTASTGEIYADYGPFSTSVTDADWKDDSTFSVCFDNGTLFHCSPTDPFVMSTFEGHQMRVNMIRWDPAGKMMASCSDDRLVRIWRLNSQTYDFSLCGHTAEVDVLCWHDTDRSILASGSSDQSVRVWNVNRGEIVYVFSFHTSPICTLEFRPGSDILASSGLDNRIMLWNVKVGGMLNEIENDDQKRIYELAWNRNGEKLAVAKADGLLYLGIEFYNHQSSSNIDLYDSSRQYRTTHRIIFLHSCDAHYDMFNSSFQILHMQYSP
Length1147
PositionTail
OrganismTrichinella sp. T9
KingdomMetazoa
LineageEukaryota> Metazoa> Ecdysozoa> Nematoda> Enoplea> Dorylaimia> Trichinellida> Trichinellidae> Trichinella> unclassified Trichinella.
Aromaticity0.08
Grand average of hydropathy-0.307
Instability index42.51
Isoelectric point4.52
Molecular weight127672.11
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP06013
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             7|     203.63|      13|      16|      45|      57|       1
---------------------------------------------------------------------------
    9-   21 (25.69/13.51)	CSALPSDELNIGF
   27-   39 (31.31/18.19)	CSTPPLSEHNRGF
   45-   57 (30.26/17.31)	CSTPPADEHNSKF
   63-   75 (30.23/17.29)	CSTPRSAEHNIGF
   81-   93 (31.52/18.36)	CSTPPSAEHNSEF
   99-  111 (29.81/16.94)	CSTPTLAEHNIGF
  117-  129 (24.81/12.78)	CSTPSLSEFDSEF
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
            15|     690.38|      40|      40|     437|     476|       2
---------------------------------------------------------------------------
  260-  294 (44.37/23.26)	............YN...S.....................SICSLDWSFEED.LLLTGSADKVVRLW..N..MKDEK
  314-  352 (41.69/21.36)	VN..........LPV.SN.....................GVVLVSWSPQGD.LIASADSRGKIRIC..K..KDGNF
  355-  393 (45.83/24.30)	NC..........FNVPED......................IAILKWNVTER.LLLTATVDGVISLWsaR..MG..D
  396-  434 (44.05/23.04)	GC..........FTPFED.....................DVTDADWKDGAT.FTACSKDGMLFHC...C..ITSTD
  437-  476 (64.93/37.85)	GP..........FNGHEN.....................SINVIKWDPTGN.MAATGSSDMMVKVW..R..FGNEE
  479-  519 (54.91/30.74)	GC..........LKGHTA.....................EVNTLGWHSTDQaILASGSEDGVVCVW..D..VINAE
  522-  561 (56.55/31.90)	HM..........LNGHMT.....................PLRMVAFRPETD.MLISCSSDSVICLW..N..GRNGK
  567-  592 (25.32/ 9.75)	G............NGDRA.....................TVNVMMWNRSGQ.MIAVGRQD................
  754-  789 (45.78/24.26)	..............GHNS.....................DVSNCAWNPKED.FLLTGSVDKIVHLW..N..LENDI
  790-  848 (36.26/17.51)	T............NVDENcvlasldlttlqvtdcrhllpDLTFVAWSPDGD.TAASVGLAGQFCIW..K..RDGSF
  851-  889 (47.04/25.15)	TC...........THPTH.....................SILLLKWSTDGK.HLLTASSNGIIVIW..T..ASTGE
  892-  920 (35.13/16.70)	AD..........YGPFST.....................SVTDADW..KD.........DSTFSV...C..FDNGT
  923-  972 (51.18/28.09)	HCsptdpfvmstFEGHQM.....................RVNMIRWDPAGK.MMASCSDDRLVRIW..R..LNSQT
  975- 1015 (53.02/29.40)	FS..........LCGHTA.....................EVDVLCWHDTDRsILASGSSDQSVRVW..N..VNRGE
 1018- 1059 (44.32/23.22)	YV..........FSFHTS.....................PICTLEFRPGSD.ILASSGLDNRIMLW..NvkVGGML
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             5|     216.84|      41|      63|     146|     186|       3
---------------------------------------------------------------------------
  148-  193 (63.88/38.40)	DQLNFLIWRFFKDHGYHVTAEMFAEDN........AVEEN.CGVED..LS.ickgsLK
  194-  221 (45.33/25.00)	KLLEML...HFKSIV..........DG........DIPQD.GNLYD..LV......PG
  222-  254 (22.02/ 8.17)	E..CFL......SESSSSTTETASVDNssedssftAVELK.C................
  628-  674 (47.72/26.73)	EDLHYLVWRFLKDTGQHRIAKQFELES........QV...lCSTLDseLPyvcfgsME
  675-  701 (37.89/19.63)	ILMDAL...HKKCVQ..........DG........DIPEM.GSLLE..LV......P.
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP06013 with Med16 domain of Kingdom Metazoa


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) MATGEGENCSALPSDELNIGFDEDENCSTPPLSEHNRGFDEDANCSTPPADEHNSKFDEDEDCSTPRSAEHNIGFDEGENCSTPPSAEHNSEFDEDADCSTPTLA
1
105










Molecular Recognition Features






MoRF SequenceStartStop




1) ALPSDELNIGFDEDE
11
25